CNFN report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
epithelial cell	5 studies	35% ± 16%	Explore
squamous epithelial cell	3 studies	62% ± 20%	Explore
basal cell	3 studies	24% ± 8%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
esophagus	3 studies	28% ± 11%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	42%	17171.60	607 / 1445	86%	781.61	158 / 183
skin	72%	6259.30	1298 / 1809	42%	72.96	197 / 472
tonsil	0%	0	0 / 0	100%	450.65	45 / 45
ureter	0%	0	0 / 0	100%	22.93	1 / 1
prostate	2%	12.06	5 / 245	92%	22.60	461 / 502
ovary	0%	0	0 / 180	93%	45.22	400 / 430
uterus	1%	600.38	2 / 170	89%	167.28	407 / 459
breast	0%	2.81	2 / 459	84%	26.48	944 / 1118
bladder	0%	0	0 / 21	77%	55.57	388 / 504
lung	0%	0	0 / 578	71%	38.80	820 / 1155
thymus	0%	1.22	1 / 653	67%	12.33	404 / 605
stomach	1%	38.81	3 / 359	57%	10.69	164 / 286
intestine	0%	1.12	1 / 966	57%	86.95	298 / 527
eye	0%	0	0 / 0	53%	6.65	42 / 80
pancreas	0%	8.09	1 / 328	37%	7.84	65 / 178
adrenal gland	0%	0	0 / 258	33%	10.37	76 / 230
kidney	0%	0	0 / 89	33%	5.55	294 / 901
lymph node	0%	0	0 / 0	24%	2.70	7 / 29
liver	0%	0	0 / 226	20%	3.88	83 / 406
brain	2%	9.17	40 / 2642	4%	0.39	26 / 705
adipose	1%	11.98	10 / 1204	0%	0	0 / 0
muscle	0%	8.88	3 / 803	0%	0	0 / 0
blood vessel	0%	4.81	3 / 1335	0%	0	0 / 0
peripheral blood	0%	3.92	1 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
heart	0%	0	0 / 861	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0