Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte precursor cell | 11 studies | 24% ± 6% | |
glutamatergic neuron | 11 studies | 60% ± 18% | |
GABAergic neuron | 8 studies | 39% ± 16% | |
retinal ganglion cell | 7 studies | 51% ± 18% | |
adipocyte | 7 studies | 42% ± 15% | |
neuron | 5 studies | 36% ± 11% | |
endothelial cell | 5 studies | 35% ± 17% | |
interneuron | 5 studies | 44% ± 19% | |
fibroblast | 4 studies | 22% ± 4% | |
GABAergic interneuron | 3 studies | 27% ± 5% | |
granule cell | 3 studies | 48% ± 36% | |
microglial cell | 3 studies | 37% ± 16% | |
ciliated cell | 3 studies | 21% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 13 studies | 35% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 99% | 6694.93 | 456 / 459 | 80% | 55.67 | 890 / 1118 |
brain | 67% | 2239.94 | 1761 / 2642 | 87% | 17.55 | 616 / 705 |
ovary | 100% | 29025.66 | 180 / 180 | 37% | 3.20 | 157 / 430 |
uterus | 97% | 3628.16 | 165 / 170 | 19% | 2.67 | 88 / 459 |
kidney | 82% | 1337.89 | 73 / 89 | 31% | 6.59 | 279 / 901 |
adrenal gland | 45% | 671.27 | 116 / 258 | 56% | 13.45 | 128 / 230 |
adipose | 100% | 7087.18 | 1203 / 1204 | 0% | 0 | 0 / 0 |
thymus | 94% | 2221.58 | 611 / 653 | 3% | 0.30 | 17 / 605 |
prostate | 62% | 1535.30 | 151 / 245 | 27% | 4.48 | 135 / 502 |
bladder | 81% | 1063.57 | 17 / 21 | 8% | 1.53 | 38 / 504 |
pancreas | 49% | 514.32 | 160 / 328 | 38% | 3.08 | 67 / 178 |
esophagus | 68% | 1057.28 | 981 / 1445 | 18% | 1.64 | 33 / 183 |
blood vessel | 80% | 2132.05 | 1070 / 1335 | 0% | 0 | 0 / 0 |
heart | 77% | 1930.20 | 660 / 861 | 0% | 0 | 0 / 0 |
intestine | 62% | 899.77 | 595 / 966 | 9% | 0.74 | 47 / 527 |
lung | 48% | 588.72 | 278 / 578 | 16% | 1.63 | 183 / 1155 |
skin | 54% | 884.23 | 971 / 1809 | 5% | 0.62 | 22 / 472 |
stomach | 35% | 500.45 | 125 / 359 | 11% | 1.59 | 32 / 286 |
muscle | 44% | 498.11 | 353 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 20% | 1.37 | 9 / 45 |
liver | 9% | 79.43 | 21 / 226 | 5% | 0.49 | 20 / 406 |
eye | 0% | 0 | 0 / 0 | 3% | 0.11 | 2 / 80 |
spleen | 1% | 7.62 | 2 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_1904862 | Biological process | inhibitory synapse assembly |
GO_0050806 | Biological process | positive regulation of synaptic transmission |
GO_0008306 | Biological process | associative learning |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0051965 | Biological process | positive regulation of synapse assembly |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0009986 | Cellular component | cell surface |
GO_0098839 | Cellular component | postsynaptic density membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0045211 | Cellular component | postsynaptic membrane |
GO_0030425 | Cellular component | dendrite |
GO_0005509 | Molecular function | calcium ion binding |
Gene name | CLSTN2 |
Protein name | Calsyntenin-2 (Alcadein-gamma) (Alc-gamma) |
Synonyms | CS2 |
Description | FUNCTION: Postsynaptic adhesion molecule that binds to presynaptic neurexins to mediate synapse formation, and which is involved in learning and memory (By similarity). Promotes synapse development by acting as a cell adhesion molecule at the postsynaptic membrane, which associates with neurexin-alpha at the presynaptic membrane (By similarity). . |
Accessions | ENST00000458420.7 Q9H4D0 |