Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 5 studies | 24% ± 6% | |
epithelial cell | 4 studies | 34% ± 10% | |
endothelial cell | 4 studies | 22% ± 9% | |
macrophage | 3 studies | 18% ± 3% | |
dendritic cell | 3 studies | 28% ± 2% | |
abnormal cell | 3 studies | 17% ± 1% | |
plasmacytoid dendritic cell | 3 studies | 20% ± 3% |
Insufficient scRNA-seq data for expression of CHTF8 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
intestine | 100% | 3379.08 | 966 / 966 | 30% | 0.66 | 156 / 527 |
stomach | 100% | 3027.04 | 359 / 359 | 19% | 0.38 | 55 / 286 |
bladder | 100% | 3663.86 | 21 / 21 | 15% | 0.34 | 78 / 504 |
prostate | 100% | 3767.43 | 245 / 245 | 10% | 0.12 | 51 / 502 |
kidney | 100% | 4387.64 | 89 / 89 | 9% | 0.12 | 84 / 901 |
thymus | 100% | 3628.03 | 653 / 653 | 8% | 0.11 | 49 / 605 |
uterus | 100% | 3516.23 | 170 / 170 | 7% | 0.09 | 32 / 459 |
lung | 100% | 2963.42 | 577 / 578 | 5% | 0.06 | 63 / 1155 |
skin | 100% | 4240.48 | 1809 / 1809 | 5% | 0.07 | 24 / 472 |
esophagus | 100% | 3461.24 | 1445 / 1445 | 5% | 0.06 | 9 / 183 |
adrenal gland | 100% | 3279.39 | 258 / 258 | 4% | 0.05 | 9 / 230 |
breast | 100% | 3491.99 | 459 / 459 | 4% | 0.05 | 43 / 1118 |
ovary | 100% | 2853.54 | 180 / 180 | 2% | 0.03 | 10 / 430 |
pancreas | 100% | 2129.61 | 328 / 328 | 2% | 0.02 | 3 / 178 |
liver | 100% | 2653.86 | 226 / 226 | 0% | 0.00 | 1 / 406 |
adipose | 100% | 3337.48 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3002.74 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 4172.51 | 241 / 241 | 0% | 0 | 0 / 0 |
brain | 98% | 1708.84 | 2599 / 2642 | 2% | 0.02 | 11 / 705 |
muscle | 100% | 1789.78 | 801 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 1814.37 | 852 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 96% | 2928.28 | 888 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 31% | 0.39 | 9 / 29 |
eye | 0% | 0 | 0 / 0 | 18% | 0.22 | 14 / 80 |
tonsil | 0% | 0 | 0 / 0 | 16% | 0.18 | 7 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0032508 | Biological process | DNA duplex unwinding |
GO_0006260 | Biological process | DNA replication |
GO_0007064 | Biological process | mitotic sister chromatid cohesion |
GO_1900264 | Biological process | positive regulation of DNA-directed DNA polymerase activity |
GO_0005654 | Cellular component | nucleoplasm |
GO_0031390 | Cellular component | Ctf18 RFC-like complex |
GO_0003677 | Molecular function | DNA binding |
GO_0003689 | Molecular function | DNA clamp loader activity |
GO_0017116 | Molecular function | single-stranded DNA helicase activity |
Gene name | CHTF8 |
Protein name | Chromosome transmission fidelity factor 8 Alternative protein CHTF8 Chromosome transmission fidelity protein 8 homolog (hCTF8) |
Synonyms | CTF8 |
Description | FUNCTION: Chromosome cohesion factor involved in sister chromatid cohesion and fidelity of chromosome transmission. Component of one of the cell nuclear antigen loader complexes, CTF18-replication factor C (CTF18-RFC), which consists of CTF18, CTF8, DSCC1, RFC2, RFC3, RFC4 and RFC5. The CTF18-RFC complex binds to single-stranded and primed DNAs and has weak ATPase activity that is stimulated the presence of primed DNA, replication protein A (RPA) and proliferating cell nuclear antigen (PCNA). The CTF18-RFC complex catalyzes the ATP-dependent loading of PCNA onto primed and gapped DNA. It also interacts with and stimulates POLH, which is suggestive of a protein network that coordinates DNA repair, recombination and chromosome cohesion reactions with replication fork progression. . |
Accessions | ENST00000523421.5 ENST00000522091.1 ENST00000519534.1 J3KSJ7 ENST00000518041.5 P0CG13 L0R4W3 E5RGY5 ENST00000398235.6 H3BQB7 ENST00000448552.7 E5RHL4 |