CFAP299 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	16 studies	45% ± 26%	Explore
glutamatergic neuron	4 studies	33% ± 20%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	31% ± 21%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	89%	18.21	578 / 653	0%	0	0 / 605
lung	70%	66.77	404 / 578	5%	0.12	61 / 1155
kidney	72%	8.55	64 / 89	0%	0.01	4 / 901
ovary	54%	5.61	97 / 180	2%	0.02	7 / 430
brain	52%	38.97	1363 / 2642	1%	0.03	8 / 705
esophagus	51%	8.46	741 / 1445	1%	0.01	1 / 183
prostate	39%	4.20	96 / 245	1%	0.01	3 / 502
skin	37%	8.66	666 / 1809	0%	0.00	1 / 472
breast	34%	3.17	156 / 459	1%	0.01	9 / 1118
adipose	26%	2.51	315 / 1204	0%	0	0 / 0
intestine	25%	2.42	238 / 966	0%	0	0 / 527
spleen	16%	1.27	38 / 241	0%	0	0 / 0
uterus	12%	8.78	21 / 170	3%	0.05	12 / 459
stomach	9%	0.70	32 / 359	0%	0	0 / 286
pancreas	8%	0.49	26 / 328	0%	0	0 / 178
lymph node	0%	0	0 / 0	7%	0.09	2 / 29
blood vessel	3%	0.23	39 / 1335	0%	0	0 / 0
muscle	2%	0.29	19 / 803	0%	0	0 / 0
adrenal gland	2%	0.16	6 / 258	0%	0	0 / 230
peripheral blood	2%	0.23	19 / 929	0%	0	0 / 0
heart	2%	0.17	16 / 861	0%	0	0 / 0
liver	0%	0.06	1 / 226	0%	0.00	1 / 406
bladder	0%	0	0 / 21	0%	0.01	2 / 504
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1