Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| non-classical monocyte | 8 studies | 30% ± 12% | |
| Mueller cell | 5 studies | 53% ± 20% | |
| microglial cell | 5 studies | 23% ± 7% | |
| adipocyte | 4 studies | 21% ± 3% | |
| monocyte | 4 studies | 20% ± 6% | |
| endothelial cell | 4 studies | 33% ± 19% | |
| astrocyte | 4 studies | 41% ± 19% | |
| plasmacytoid dendritic cell | 3 studies | 17% ± 2% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 3 studies | 23% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| ovary | 100% | 12290.99 | 180 / 180 | 69% | 2.82 | 295 / 430 |
| liver | 97% | 1512.62 | 219 / 226 | 60% | 1.63 | 244 / 406 |
| pancreas | 96% | 1888.59 | 315 / 328 | 60% | 1.21 | 106 / 178 |
| breast | 98% | 1855.10 | 450 / 459 | 44% | 0.99 | 497 / 1118 |
| bladder | 90% | 1444.81 | 19 / 21 | 46% | 2.43 | 233 / 504 |
| lung | 100% | 2582.39 | 578 / 578 | 35% | 0.95 | 403 / 1155 |
| brain | 82% | 1862.58 | 2170 / 2642 | 50% | 1.21 | 355 / 705 |
| uterus | 98% | 2864.03 | 166 / 170 | 34% | 1.47 | 155 / 459 |
| adrenal gland | 90% | 1000.68 | 233 / 258 | 31% | 2.18 | 71 / 230 |
| spleen | 100% | 1939.26 | 241 / 241 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 100% | 5.42 | 1 / 1 |
| adipose | 99% | 2597.97 | 1189 / 1204 | 0% | 0 | 0 / 0 |
| esophagus | 80% | 3470.88 | 1159 / 1445 | 17% | 0.41 | 32 / 183 |
| thymus | 72% | 686.50 | 467 / 653 | 22% | 1.17 | 134 / 605 |
| prostate | 84% | 1216.31 | 205 / 245 | 9% | 0.14 | 46 / 502 |
| heart | 78% | 734.24 | 675 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 78% | 1442.55 | 721 / 929 | 0% | 0 | 0 / 0 |
| intestine | 67% | 544.63 | 647 / 966 | 7% | 0.18 | 38 / 527 |
| blood vessel | 66% | 723.28 | 884 / 1335 | 0% | 0 | 0 / 0 |
| stomach | 39% | 417.24 | 140 / 359 | 13% | 0.25 | 37 / 286 |
| kidney | 16% | 93.47 | 14 / 89 | 29% | 1.05 | 257 / 901 |
| skin | 36% | 225.43 | 656 / 1809 | 7% | 0.12 | 34 / 472 |
| tonsil | 0% | 0 | 0 / 0 | 40% | 1.94 | 18 / 45 |
| lymph node | 0% | 0 | 0 / 0 | 38% | 0.55 | 11 / 29 |
| muscle | 15% | 78.57 | 120 / 803 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 9% | 0.34 | 7 / 80 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0007601 | Biological process | visual perception |
| GO_0007605 | Biological process | sensory perception of sound |
| GO_0098742 | Biological process | cell-cell adhesion via plasma-membrane adhesion molecules |
| GO_0051480 | Biological process | regulation of cytosolic calcium ion concentration |
| GO_0031175 | Biological process | neuron projection development |
| GO_0045494 | Biological process | photoreceptor cell maintenance |
| GO_0050957 | Biological process | equilibrioception |
| GO_0007275 | Biological process | multicellular organism development |
| GO_0060088 | Biological process | auditory receptor cell stereocilium organization |
| GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
| GO_0090102 | Biological process | cochlea development |
| GO_0050953 | Biological process | sensory perception of light stimulus |
| GO_0016339 | Biological process | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules |
| GO_0007626 | Biological process | locomotory behavior |
| GO_0006816 | Biological process | calcium ion transport |
| GO_0016477 | Biological process | cell migration |
| GO_0060091 | Cellular component | kinocilium |
| GO_0032420 | Cellular component | stereocilium |
| GO_0016020 | Cellular component | membrane |
| GO_0005813 | Cellular component | centrosome |
| GO_0001917 | Cellular component | photoreceptor inner segment |
| GO_0016342 | Cellular component | catenin complex |
| GO_0098684 | Cellular component | photoreceptor ribbon synapse |
| GO_0032426 | Cellular component | stereocilium tip |
| GO_0098683 | Cellular component | cochlear hair cell ribbon synapse |
| GO_0045296 | Molecular function | cadherin binding |
| GO_0008013 | Molecular function | beta-catenin binding |
| GO_0005509 | Molecular function | calcium ion binding |
| GO_0005515 | Molecular function | protein binding |
| Gene name | CDH23 |
| Protein name | Alternative protein CDH23 CDH23 protein CDH23 protein (Cadherin related 23) Cadherin related 23 Cadherin-23 (Otocadherin) |
| Synonyms | KIAA1774 UNQ1894/PRO4340 KIAA1812 |
| Description | FUNCTION: Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells. CDH23 is required for establishing and/or maintaining the proper organization of the stereocilia bundle of hair cells in the cochlea and the vestibule during late embryonic/early postnatal development. It is part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing. . |
| Accessions | ENST00000224721.12 [Q9H251-1] ENST00000619887.4 [Q9H251-9] ENST00000470494.5 L8EAB0 ENST00000398809.9 ENST00000644511.1 A0A2R8Y663 ENST00000642965.1 A0A2R8Y6D5 ENST00000616684.4 A0A087WWD9 Q9H251 ENST00000646131.1 ENST00000299366.11 Q32P55 A0A087WYR8 B1AVV0 ENST00000442677.4 ENST00000398788.4 [Q9H251-7] ENST00000466757.8 ENST00000461841.7 [Q9H251-5] Q8N5B3 Q6P152 A0A0A0MS94 A0A2R8YEM1 R4GN92 A5D6V9 |
