CCNJL report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
GABAergic neuron	3 studies	23% ± 9%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	593.13	650 / 653	98%	4.68	591 / 605
lung	99%	1023.45	575 / 578	80%	8.78	929 / 1155
ovary	94%	677.36	170 / 180	77%	2.79	331 / 430
kidney	91%	295.04	81 / 89	73%	3.17	660 / 901
adrenal gland	97%	461.29	250 / 258	67%	2.63	154 / 230
intestine	64%	518.91	622 / 966	76%	2.95	401 / 527
bladder	57%	313.33	12 / 21	82%	4.87	413 / 504
stomach	79%	679.65	285 / 359	59%	1.82	170 / 286
brain	53%	752.36	1409 / 2642	56%	1.28	392 / 705
uterus	29%	83.62	50 / 170	75%	4.42	346 / 459
breast	45%	145.77	205 / 459	58%	1.94	647 / 1118
spleen	100%	996.91	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	4.34	1 / 1
heart	90%	388.19	778 / 861	0%	0	0 / 0
prostate	69%	179.51	170 / 245	19%	0.25	93 / 502
peripheral blood	82%	3843.35	762 / 929	0%	0	0 / 0
esophagus	30%	68.83	433 / 1445	52%	1.64	95 / 183
tonsil	0%	0	0 / 0	80%	4.91	36 / 45
skin	5%	9.84	99 / 1809	73%	3.58	346 / 472
pancreas	1%	1.08	2 / 328	61%	1.99	108 / 178
blood vessel	23%	46.73	302 / 1335	0%	0	0 / 0
liver	2%	4.37	5 / 226	17%	0.62	67 / 406
adipose	18%	38.59	219 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	11%	0.18	9 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
muscle	0%	0	0 / 803	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0