CCDC60 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	13 studies	34% ± 15%	Explore
retinal cone cell	4 studies	27% ± 12%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	98%	259.29	240 / 245	73%	3.14	365 / 502
bladder	100%	262.48	21 / 21	32%	1.63	162 / 504
intestine	65%	37.20	630 / 966	29%	1.32	153 / 527
lung	65%	108.61	376 / 578	26%	1.04	295 / 1155
uterus	33%	42.55	56 / 170	38%	4.09	176 / 459
esophagus	32%	29.19	466 / 1445	13%	0.42	24 / 183
tonsil	0%	0	0 / 0	40%	1.99	18 / 45
stomach	9%	2.66	34 / 359	16%	0.50	46 / 286
ovary	6%	1.18	10 / 180	14%	0.74	62 / 430
brain	19%	39.63	494 / 2642	0%	0.05	3 / 705
thymus	2%	0.81	16 / 653	8%	0.37	51 / 605
breast	2%	0.87	10 / 459	9%	0.37	97 / 1118
skin	7%	1.26	122 / 1809	0%	0.00	1 / 472
pancreas	0%	0	0 / 328	6%	0.45	11 / 178
heart	3%	0.64	30 / 861	0%	0	0 / 0
kidney	2%	0.45	2 / 89	1%	0.05	10 / 901
liver	0%	0	0 / 226	1%	0.03	6 / 406
eye	0%	0	0 / 0	1%	0.03	1 / 80
spleen	1%	0.15	2 / 241	0%	0	0 / 0
adipose	1%	0.11	8 / 1204	0%	0	0 / 0
muscle	0%	0.19	3 / 803	0%	0	0 / 0
blood vessel	0%	0.04	3 / 1335	0%	0	0 / 0
peripheral blood	0%	0.75	2 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
adrenal gland	0%	0	0 / 258	0%	0	0 / 230
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1