CATIP report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	11 studies	30% ± 12%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	237.41	652 / 653	66%	1.44	401 / 605
prostate	93%	81.62	227 / 245	58%	1.12	292 / 502
kidney	100%	159.08	89 / 89	48%	1.65	433 / 901
lung	98%	168.26	567 / 578	11%	0.27	124 / 1155
pancreas	94%	35.04	308 / 328	6%	0.12	10 / 178
spleen	80%	36.20	193 / 241	0%	0	0 / 0
ovary	63%	17.43	113 / 180	14%	0.43	61 / 430
peripheral blood	77%	72.03	711 / 929	0%	0	0 / 0
uterus	56%	42.29	95 / 170	6%	0.28	29 / 459
brain	45%	33.52	1177 / 2642	7%	0.25	51 / 705
adrenal gland	43%	9.07	112 / 258	1%	0.01	3 / 230
bladder	29%	5.71	6 / 21	2%	0.03	8 / 504
breast	17%	3.34	80 / 459	8%	0.16	93 / 1118
adipose	20%	4.81	244 / 1204	0%	0	0 / 0
stomach	19%	4.13	67 / 359	0%	0.00	1 / 286
liver	11%	4.03	25 / 226	1%	0.03	5 / 406
blood vessel	8%	1.94	110 / 1335	0%	0	0 / 0
intestine	4%	0.95	43 / 966	1%	0.01	3 / 527
esophagus	3%	0.61	47 / 1445	1%	0.02	2 / 183
heart	2%	0.43	20 / 861	0%	0	0 / 0
skin	0%	0.03	4 / 1809	0%	0.00	1 / 472
muscle	0%	0.04	2 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1