CAPS report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	20 studies	83% ± 20%	Explore
basal cell	7 studies	29% ± 10%	Explore
epithelial cell	6 studies	57% ± 21%	Explore
secretory cell	6 studies	22% ± 4%	Explore
deuterosomal cell	4 studies	62% ± 9%	Explore
club cell	4 studies	29% ± 2%	Explore
respiratory goblet cell	3 studies	30% ± 13%	Explore
ependymal cell	3 studies	45% ± 18%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	4 studies	31% ± 8%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	4692.24	244 / 245	95%	43.86	478 / 502
thymus	100%	3784.10	653 / 653	91%	56.63	550 / 605
ovary	100%	1644.19	180 / 180	89%	86.71	381 / 430
pancreas	99%	1398.82	326 / 328	84%	43.63	150 / 178
bladder	100%	4152.24	21 / 21	70%	100.42	351 / 504
breast	98%	1505.69	450 / 459	71%	45.84	790 / 1118
lung	99%	4656.20	573 / 578	54%	30.46	620 / 1155
brain	98%	2257.17	2601 / 2642	53%	24.22	372 / 705
uterus	100%	2524.98	170 / 170	50%	85.82	229 / 459
intestine	100%	2007.69	966 / 966	37%	12.66	196 / 527
adrenal gland	100%	2427.30	258 / 258	32%	6.43	73 / 230
stomach	100%	2997.64	359 / 359	31%	12.61	89 / 286
esophagus	100%	1631.43	1441 / 1445	22%	5.91	40 / 183
kidney	100%	2884.85	89 / 89	18%	6.18	158 / 901
skin	91%	1383.11	1646 / 1809	24%	25.69	115 / 472
liver	93%	1151.21	211 / 226	18%	10.75	75 / 406
spleen	100%	3021.27	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	17.98	1 / 1
blood vessel	97%	1042.71	1301 / 1335	0%	0	0 / 0
adipose	97%	1298.27	1173 / 1204	0%	0	0 / 0
peripheral blood	91%	1040.01	845 / 929	0%	0	0 / 0
heart	84%	772.34	721 / 861	0%	0	0 / 0
muscle	28%	143.95	222 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	28%	5.78	8 / 29
eye	0%	0	0 / 0	20%	3.45	16 / 80
tonsil	0%	0	0 / 0	18%	3.73	8 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0