Name | Number of supported studies | Average coverage | |
---|---|---|---|
retinal cone cell | 8 studies | 49% ± 13% | |
retinal rod cell | 8 studies | 40% ± 18% | |
interneuron | 6 studies | 32% ± 18% | |
GABAergic neuron | 6 studies | 36% ± 17% | |
neuron | 5 studies | 28% ± 7% | |
microglial cell | 5 studies | 26% ± 6% | |
oligodendrocyte precursor cell | 5 studies | 22% ± 8% | |
ciliated cell | 5 studies | 27% ± 6% | |
astrocyte | 5 studies | 29% ± 10% | |
endothelial cell | 4 studies | 27% ± 17% | |
glutamatergic neuron | 4 studies | 55% ± 14% | |
oligodendrocyte | 4 studies | 25% ± 7% | |
granule cell | 3 studies | 21% ± 4% | |
macrophage | 3 studies | 24% ± 7% | |
epithelial cell | 3 studies | 39% ± 10% | |
basal cell | 3 studies | 25% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4075.63 | 1444 / 1445 | 100% | 25.53 | 183 / 183 |
brain | 100% | 4567.98 | 2634 / 2642 | 100% | 31.12 | 705 / 705 |
prostate | 100% | 2278.51 | 245 / 245 | 100% | 16.55 | 500 / 502 |
breast | 100% | 2187.86 | 459 / 459 | 99% | 19.49 | 1109 / 1118 |
intestine | 100% | 2196.23 | 963 / 966 | 99% | 13.64 | 524 / 527 |
uterus | 100% | 2919.31 | 170 / 170 | 99% | 22.63 | 453 / 459 |
bladder | 100% | 2765.38 | 21 / 21 | 99% | 15.60 | 497 / 504 |
lung | 99% | 2347.26 | 575 / 578 | 99% | 17.88 | 1139 / 1155 |
skin | 100% | 3189.75 | 1809 / 1809 | 98% | 17.61 | 461 / 472 |
thymus | 99% | 1602.45 | 647 / 653 | 97% | 15.43 | 587 / 605 |
kidney | 100% | 1617.13 | 89 / 89 | 96% | 14.79 | 864 / 901 |
ovary | 100% | 3080.19 | 180 / 180 | 96% | 12.38 | 411 / 430 |
stomach | 97% | 1526.86 | 347 / 359 | 98% | 13.65 | 279 / 286 |
adrenal gland | 100% | 2750.85 | 258 / 258 | 93% | 13.38 | 215 / 230 |
pancreas | 95% | 1241.73 | 310 / 328 | 99% | 14.81 | 176 / 178 |
liver | 66% | 727.61 | 149 / 226 | 67% | 5.66 | 271 / 406 |
adipose | 100% | 2272.15 | 1204 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 6839.86 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1597.32 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 31.96 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.75 | 1 / 1 |
blood vessel | 100% | 2615.43 | 1334 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 10.92 | 28 / 29 |
eye | 0% | 0 | 0 / 0 | 95% | 11.06 | 76 / 80 |
heart | 93% | 1578.78 | 799 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 33% | 816.16 | 309 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0022604 | Biological process | regulation of cell morphogenesis |
GO_0007010 | Biological process | cytoskeleton organization |
GO_0031113 | Biological process | regulation of microtubule polymerization |
GO_0000226 | Biological process | microtubule cytoskeleton organization |
GO_0031175 | Biological process | neuron projection development |
GO_0005815 | Cellular component | microtubule organizing center |
GO_0036449 | Cellular component | microtubule minus-end |
GO_0005874 | Cellular component | microtubule |
GO_0005737 | Cellular component | cytoplasm |
GO_0008017 | Molecular function | microtubule binding |
GO_0005516 | Molecular function | calmodulin binding |
GO_0030507 | Molecular function | spectrin binding |
GO_0051011 | Molecular function | microtubule minus-end binding |
Gene name | CAMSAP1 |
Protein name | CAMSAP1 protein Calmodulin-regulated spectrin-associated protein 1 |
Synonyms | |
Description | FUNCTION: Key microtubule-organizing protein that specifically binds the minus-end of non-centrosomal microtubules and regulates their dynamics and organization . Specifically recognizes growing microtubule minus-ends and stabilizes microtubules . Acts on free microtubule minus-ends that are not capped by microtubule-nucleating proteins or other factors and protects microtubule minus-ends from depolymerization . In contrast to CAMSAP2 and CAMSAP3, tracks along the growing tips of minus-end microtubules without significantly affecting the polymerization rate: binds at the very tip of the microtubules minus-end and acts as a minus-end tracking protein (-TIP) that dissociates from microtubules after allowing tubulin incorporation . Through interaction with spectrin may regulate neurite outgrowth . . |
Accessions | ENST00000409386.3 [Q5T5Y3-3] Q5T5Y3 B7ZLW1 ENST00000389532.9 [Q5T5Y3-1] ENST00000312405.10 [Q5T5Y3-2] |