CALML3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
basal cell	5 studies	27% ± 10%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
esophagus	3 studies	46% ± 23%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
tonsil	0%	0	0 / 0	96%	24.50	43 / 45
esophagus	39%	8518.88	569 / 1445	53%	8.94	97 / 183
skin	72%	5580.41	1294 / 1809	7%	1.20	34 / 472
uterus	2%	206.24	3 / 170	48%	12.84	219 / 459
kidney	37%	564.11	33 / 89	0%	0.09	2 / 901
lung	0%	0	0 / 578	32%	6.57	368 / 1155
bladder	0%	0	0 / 21	17%	3.11	88 / 504
thymus	0%	0.59	1 / 653	15%	6.65	89 / 605
prostate	10%	85.16	25 / 245	0%	0.03	1 / 502
breast	7%	50.48	32 / 459	3%	0.37	34 / 1118
pancreas	0%	1.10	1 / 328	4%	0.52	7 / 178
liver	3%	18.04	6 / 226	1%	0.05	3 / 406
intestine	0%	0.73	1 / 966	2%	0.31	11 / 527
stomach	1%	13.96	2 / 359	0%	0.09	1 / 286
adipose	1%	13.25	9 / 1204	0%	0	0 / 0
muscle	0%	5.32	4 / 803	0%	0	0 / 0
blood vessel	0%	4.79	3 / 1335	0%	0	0 / 0
peripheral blood	0%	1.03	2 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
adrenal gland	0%	0	0 / 258	0%	0	0 / 230
bone marrow	0%	0	0 / 0	0%	0	0 / 0
brain	0%	0	0 / 2642	0%	0	0 / 705
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
heart	0%	0	0 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
ovary	0%	0	0 / 180	0%	0	0 / 430
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1