Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 18 studies | 52% ± 22% | |
endothelial cell | 14 studies | 28% ± 14% | |
oligodendrocyte precursor cell | 8 studies | 25% ± 7% | |
fibroblast | 8 studies | 25% ± 13% | |
adipocyte | 8 studies | 29% ± 8% | |
basal cell | 6 studies | 37% ± 23% | |
type II pneumocyte | 6 studies | 41% ± 13% | |
glutamatergic neuron | 5 studies | 35% ± 10% | |
club cell | 5 studies | 27% ± 9% | |
epithelial cell | 4 studies | 32% ± 12% | |
interneuron | 4 studies | 26% ± 5% | |
neuron | 4 studies | 42% ± 13% | |
pericyte | 4 studies | 42% ± 18% | |
mesothelial cell | 4 studies | 34% ± 12% | |
ciliated cell | 4 studies | 28% ± 9% | |
endothelial cell of vascular tree | 3 studies | 37% ± 15% | |
ependymal cell | 3 studies | 54% ± 14% | |
GABAergic neuron | 3 studies | 43% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 4221.61 | 180 / 180 | 99% | 16.18 | 424 / 430 |
brain | 94% | 1867.32 | 2481 / 2642 | 99% | 22.10 | 698 / 705 |
thymus | 100% | 1950.58 | 652 / 653 | 92% | 12.70 | 554 / 605 |
esophagus | 99% | 1263.38 | 1429 / 1445 | 87% | 10.69 | 159 / 183 |
lung | 100% | 1635.81 | 576 / 578 | 83% | 13.16 | 959 / 1155 |
breast | 100% | 3521.02 | 459 / 459 | 77% | 7.45 | 860 / 1118 |
pancreas | 99% | 913.47 | 324 / 328 | 76% | 4.44 | 135 / 178 |
uterus | 100% | 3402.08 | 170 / 170 | 74% | 9.28 | 340 / 459 |
skin | 100% | 1904.14 | 1808 / 1809 | 72% | 7.27 | 339 / 472 |
prostate | 100% | 2485.98 | 244 / 245 | 69% | 5.25 | 344 / 502 |
stomach | 100% | 1437.01 | 359 / 359 | 67% | 6.48 | 191 / 286 |
kidney | 99% | 961.19 | 88 / 89 | 57% | 4.38 | 512 / 901 |
intestine | 93% | 853.35 | 902 / 966 | 57% | 4.03 | 298 / 527 |
bladder | 100% | 1710.81 | 21 / 21 | 48% | 4.09 | 241 / 504 |
adrenal gland | 100% | 3043.70 | 258 / 258 | 42% | 3.67 | 96 / 230 |
adipose | 100% | 3109.81 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 1256.62 | 1326 / 1335 | 0% | 0 | 0 / 0 |
spleen | 99% | 1304.63 | 239 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 73% | 5.71 | 33 / 45 |
heart | 73% | 551.17 | 630 / 861 | 0% | 0 | 0 / 0 |
muscle | 67% | 405.91 | 536 / 803 | 0% | 0 | 0 / 0 |
liver | 14% | 55.93 | 31 / 226 | 25% | 1.81 | 102 / 406 |
eye | 0% | 0 | 0 / 0 | 8% | 0.38 | 6 / 80 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.13 | 1 / 29 |
peripheral blood | 0% | 0.40 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0070588 | Biological process | calcium ion transmembrane transport |
GO_0005891 | Cellular component | voltage-gated calcium channel complex |
GO_0005245 | Molecular function | voltage-gated calcium channel activity |
Gene name | CACHD1 |
Protein name | Cache domain containing 1 VWFA and cache domain-containing protein 1 (Cache domain-containing protein 1) |
Synonyms | KIAA1573 VWCD1 |
Description | FUNCTION: May regulate voltage-dependent calcium channels. . |
Accessions | Q5VU97 A0A0A0MQY7 A0A3B3ISH2 ENST00000651257.2 [Q5VU97-1] ENST00000650260.1 ENST00000290039.6 |