CA3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	3 studies	25% ± 9%	Explore
endothelial cell	3 studies	33% ± 16%	Explore
astrocyte	3 studies	24% ± 8%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	95%	261.02	623 / 653	87%	4.68	525 / 605
lung	100%	2055.61	576 / 578	55%	2.77	638 / 1155
stomach	82%	250.06	296 / 359	59%	1.80	170 / 286
uterus	92%	472.29	157 / 170	48%	12.63	219 / 459
kidney	82%	137.35	73 / 89	57%	2.01	516 / 901
breast	87%	512.80	398 / 459	48%	3.97	540 / 1118
prostate	79%	1572.82	194 / 245	37%	21.04	186 / 502
intestine	61%	149.01	587 / 966	54%	1.44	283 / 527
ovary	38%	78.78	68 / 180	72%	2.37	308 / 430
brain	48%	78.66	1275 / 2642	61%	21.59	430 / 705
muscle	100%	150150.98	803 / 803	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	4.01	1 / 1
adrenal gland	79%	294.04	203 / 258	16%	0.66	37 / 230
pancreas	14%	19.85	47 / 328	79%	2.90	140 / 178
esophagus	39%	124.53	566 / 1445	48%	1.71	87 / 183
heart	81%	348.95	696 / 861	0%	0	0 / 0
bladder	48%	84.52	10 / 21	32%	0.90	163 / 504
skin	69%	212.02	1247 / 1809	9%	0.31	41 / 472
adipose	69%	600.94	830 / 1204	0%	0	0 / 0
liver	41%	64.39	93 / 226	13%	4.46	53 / 406
blood vessel	51%	244.09	678 / 1335	0%	0	0 / 0
tonsil	0%	0	0 / 0	31%	3.33	14 / 45
peripheral blood	19%	85.50	177 / 929	0%	0	0 / 0
spleen	18%	27.43	44 / 241	0%	0	0 / 0
eye	0%	0	0 / 0	3%	0.09	2 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0