Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 11 studies | 24% ± 6% | |
smooth muscle cell | 9 studies | 20% ± 2% | |
endothelial cell | 9 studies | 25% ± 11% | |
connective tissue cell | 7 studies | 29% ± 10% | |
epithelial cell | 7 studies | 34% ± 18% | |
pericyte | 6 studies | 23% ± 7% | |
myofibroblast cell | 5 studies | 29% ± 8% | |
progenitor cell | 4 studies | 20% ± 2% | |
mesothelial cell | 3 studies | 32% ± 12% | |
neural crest cell | 3 studies | 29% ± 5% | |
neuron | 3 studies | 27% ± 16% | |
dendritic cell | 3 studies | 19% ± 5% | |
intestinal crypt stem cell | 3 studies | 20% ± 5% | |
basal cell | 3 studies | 30% ± 15% | |
endothelial cell of vascular tree | 3 studies | 18% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 3077.94 | 459 / 459 | 100% | 76.81 | 1118 / 1118 |
esophagus | 100% | 2014.92 | 1445 / 1445 | 100% | 41.44 | 183 / 183 |
ovary | 100% | 3396.56 | 180 / 180 | 100% | 66.52 | 430 / 430 |
pancreas | 100% | 1871.77 | 328 / 328 | 100% | 47.40 | 178 / 178 |
thymus | 100% | 3560.39 | 653 / 653 | 100% | 74.48 | 604 / 605 |
brain | 100% | 1656.71 | 2637 / 2642 | 100% | 70.49 | 705 / 705 |
prostate | 100% | 2526.62 | 245 / 245 | 100% | 59.25 | 501 / 502 |
uterus | 100% | 2852.01 | 170 / 170 | 100% | 68.24 | 458 / 459 |
kidney | 100% | 1981.65 | 89 / 89 | 100% | 53.34 | 898 / 901 |
lung | 100% | 2018.56 | 576 / 578 | 100% | 55.38 | 1155 / 1155 |
stomach | 100% | 1876.30 | 359 / 359 | 100% | 49.57 | 285 / 286 |
intestine | 100% | 2248.54 | 966 / 966 | 100% | 60.57 | 525 / 527 |
bladder | 100% | 2745.90 | 21 / 21 | 100% | 60.45 | 502 / 504 |
liver | 100% | 1067.19 | 226 / 226 | 99% | 38.32 | 403 / 406 |
adrenal gland | 100% | 2718.66 | 258 / 258 | 99% | 58.48 | 228 / 230 |
skin | 100% | 2814.61 | 1808 / 1809 | 98% | 54.87 | 464 / 472 |
adipose | 100% | 2778.39 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2306.77 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 33.64 | 29 / 29 |
muscle | 100% | 4161.34 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1815.20 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 53.07 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 16.94 | 1 / 1 |
heart | 99% | 1873.51 | 855 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 45.60 | 78 / 80 |
peripheral blood | 26% | 409.12 | 237 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0071962 | Biological process | mitotic sister chromatid cohesion, centromeric |
GO_0071459 | Biological process | protein localization to chromosome, centromeric region |
GO_0051301 | Biological process | cell division |
GO_0007080 | Biological process | mitotic metaphase chromosome alignment |
GO_1990758 | Biological process | mitotic sister chromatid biorientation |
GO_0032515 | Biological process | negative regulation of phosphoprotein phosphatase activity |
GO_0048188 | Cellular component | Set1C/COMPASS complex |
GO_0005813 | Cellular component | centrosome |
GO_0000940 | Cellular component | outer kinetochore |
GO_0005876 | Cellular component | spindle microtubule |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000922 | Cellular component | spindle pole |
GO_0005737 | Cellular component | cytoplasm |
GO_0004864 | Molecular function | protein phosphatase inhibitor activity |
GO_0051721 | Molecular function | protein phosphatase 2A binding |
Gene name | BOD1 |
Protein name | Biorientation of chromosomes in cell division 1 Biorientation of chromosomes in cell division protein 1 (Biorientation defective protein 1) (Protein FAM44B) |
Synonyms | FAM44B |
Description | FUNCTION: Required for proper chromosome biorientation through the detection or correction of syntelic attachments in mitotic spindles. . |
Accessions | C9JNZ5 ENST00000311086.9 [Q96IK1-1] H7C5I4 ENST00000477985.1 Q96IK1 C9J8U9 ENST00000462674.1 ENST00000285908.5 [Q96IK1-2] ENST00000480951.1 |