Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 8 studies | 24% ± 7% | |
epithelial cell | 6 studies | 30% ± 13% | |
ciliated cell | 6 studies | 21% ± 5% | |
B cell | 3 studies | 16% ± 2% | |
GABAergic neuron | 3 studies | 40% ± 5% | |
glutamatergic neuron | 3 studies | 50% ± 7% | |
dendritic cell | 3 studies | 26% ± 9% | |
basal cell | 3 studies | 23% ± 2% | |
transit amplifying cell | 3 studies | 24% ± 5% | |
astrocyte | 3 studies | 26% ± 7% | |
oligodendrocyte | 3 studies | 20% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 3204.19 | 21 / 21 | 100% | 27.43 | 504 / 504 |
breast | 100% | 3264.74 | 459 / 459 | 100% | 31.18 | 1118 / 1118 |
esophagus | 100% | 2944.23 | 1445 / 1445 | 100% | 30.72 | 183 / 183 |
intestine | 100% | 3056.91 | 966 / 966 | 100% | 26.71 | 527 / 527 |
lung | 100% | 3111.84 | 578 / 578 | 100% | 27.17 | 1155 / 1155 |
pancreas | 100% | 1922.55 | 328 / 328 | 100% | 24.24 | 178 / 178 |
prostate | 100% | 3075.88 | 245 / 245 | 100% | 24.81 | 502 / 502 |
stomach | 100% | 2309.78 | 359 / 359 | 100% | 24.42 | 286 / 286 |
uterus | 100% | 3408.84 | 170 / 170 | 100% | 29.92 | 459 / 459 |
thymus | 100% | 3093.79 | 653 / 653 | 100% | 21.63 | 604 / 605 |
ovary | 100% | 3135.26 | 180 / 180 | 100% | 17.32 | 429 / 430 |
liver | 100% | 1693.21 | 226 / 226 | 99% | 13.33 | 403 / 406 |
skin | 100% | 4213.27 | 1809 / 1809 | 99% | 25.35 | 468 / 472 |
kidney | 100% | 2341.30 | 89 / 89 | 99% | 18.40 | 893 / 901 |
brain | 100% | 2285.07 | 2630 / 2642 | 99% | 17.38 | 701 / 705 |
adrenal gland | 100% | 3062.52 | 258 / 258 | 97% | 18.57 | 223 / 230 |
adipose | 100% | 3160.78 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 30.22 | 29 / 29 |
muscle | 100% | 3904.58 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3417.41 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 30.79 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.60 | 1 / 1 |
blood vessel | 100% | 2845.90 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 2111.08 | 846 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 19.22 | 77 / 80 |
peripheral blood | 72% | 1972.00 | 668 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000479 | Biological process | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0000462 | Biological process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0005730 | Cellular component | nucleolus |
GO_0005694 | Cellular component | chromosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0030686 | Cellular component | 90S preribosome |
GO_0032040 | Cellular component | small-subunit processome |
GO_0034511 | Molecular function | U3 snoRNA binding |
GO_0005525 | Molecular function | GTP binding |
GO_0003924 | Molecular function | GTPase activity |
GO_0005524 | Molecular function | ATP binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | BMS1 |
Protein name | Ribosome biogenesis protein BMS1 homolog (Ribosome assembly protein BMS1 homolog) |
Synonyms | BMS1L KIAA0187 |
Description | FUNCTION: Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome. . |
Accessions | ENST00000374518.6 Q14692 |