Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| astrocyte | 8 studies | 27% ± 10% | |
| epithelial cell | 7 studies | 28% ± 12% | |
| type I pneumocyte | 3 studies | 22% ± 3% | |
| type II pneumocyte | 3 studies | 24% ± 8% | |
| dendritic cell | 3 studies | 25% ± 6% | |
| goblet cell | 3 studies | 22% ± 4% | |
| endothelial cell | 3 studies | 20% ± 4% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 3 studies | 26% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 2537.69 | 1445 / 1445 | 100% | 22.69 | 183 / 183 |
| pancreas | 100% | 2956.84 | 328 / 328 | 100% | 28.80 | 178 / 178 |
| prostate | 100% | 2840.76 | 245 / 245 | 100% | 66.61 | 501 / 502 |
| ovary | 100% | 3920.99 | 180 / 180 | 100% | 30.06 | 429 / 430 |
| thymus | 100% | 2322.57 | 653 / 653 | 100% | 25.22 | 603 / 605 |
| kidney | 100% | 2625.21 | 89 / 89 | 99% | 30.82 | 896 / 901 |
| uterus | 100% | 2212.35 | 170 / 170 | 99% | 40.49 | 456 / 459 |
| stomach | 100% | 3492.31 | 359 / 359 | 99% | 27.97 | 284 / 286 |
| intestine | 100% | 2297.46 | 966 / 966 | 99% | 30.68 | 522 / 527 |
| bladder | 100% | 3910.67 | 21 / 21 | 99% | 74.28 | 498 / 504 |
| lung | 99% | 2380.08 | 575 / 578 | 99% | 30.51 | 1142 / 1155 |
| breast | 100% | 1876.58 | 458 / 459 | 98% | 34.36 | 1101 / 1118 |
| adrenal gland | 100% | 5694.91 | 258 / 258 | 97% | 23.45 | 223 / 230 |
| skin | 100% | 1819.60 | 1808 / 1809 | 96% | 18.23 | 453 / 472 |
| brain | 98% | 1357.38 | 2588 / 2642 | 94% | 13.38 | 663 / 705 |
| liver | 96% | 1073.83 | 217 / 226 | 89% | 20.06 | 362 / 406 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 36.10 | 29 / 29 |
| spleen | 100% | 1410.26 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 41.88 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 103.28 | 1 / 1 |
| adipose | 100% | 1903.56 | 1203 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 1852.72 | 1332 / 1335 | 0% | 0 | 0 / 0 |
| muscle | 100% | 2419.79 | 800 / 803 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 99% | 14.67 | 79 / 80 |
| heart | 98% | 2089.80 | 845 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 50% | 888.13 | 469 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0009099 | Biological process | valine biosynthetic process |
| GO_1990830 | Biological process | cellular response to leukemia inhibitory factor |
| GO_0010817 | Biological process | regulation of hormone levels |
| GO_0006550 | Biological process | isoleucine catabolic process |
| GO_0006629 | Biological process | lipid metabolic process |
| GO_0009098 | Biological process | L-leucine biosynthetic process |
| GO_0009082 | Biological process | branched-chain amino acid biosynthetic process |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0005759 | Cellular component | mitochondrial matrix |
| GO_0005739 | Cellular component | mitochondrion |
| GO_0052655 | Molecular function | L-valine transaminase activity |
| GO_0052654 | Molecular function | L-leucine transaminase activity |
| GO_0052656 | Molecular function | L-isoleucine transaminase activity |
| GO_0004084 | Molecular function | branched-chain-amino-acid transaminase activity |
| GO_0050048 | Molecular function | L-leucine:2-oxoglutarate aminotransferase activity |
| Gene name | BCAT2 |
| Protein name | Branched-chain-amino-acid aminotransferase, mitochondrial (BCAT(m)) (EC 2.6.1.42) (Placental protein 18) (PP18) Branched-chain-amino-acid aminotransferase (EC 2.6.1.42) branched-chain-amino-acid transaminase (EC 2.6.1.42) |
| Synonyms | ECA40 BCT2 BCATM |
| Description | FUNCTION: Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine . May also function as a transporter of branched chain alpha-keto acids (By similarity). . |
| Accessions | ENST00000593515.5 M0QZ10 O15382 ENST00000316273.11 [O15382-1] ENST00000601681.5 ENST00000597011.5 ENST00000598162.5 M0QXF9 M0QZP4 ENST00000599246.5 B3KSI3 M0R2K7 ENST00000545387.6 [O15382-2] ENST00000402551.5 |
