Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 9 studies | 32% ± 13% | |
epithelial cell of proximal tubule | 8 studies | 51% ± 17% | |
kidney loop of Henle epithelial cell | 4 studies | 25% ± 11% | |
ependymal cell | 3 studies | 33% ± 14% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
kidney | 5 studies | 27% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 95% | 1085.16 | 2506 / 2642 | 97% | 80.10 | 684 / 705 |
kidney | 98% | 9300.53 | 87 / 89 | 84% | 184.90 | 761 / 901 |
thymus | 91% | 776.85 | 592 / 653 | 38% | 7.73 | 229 / 605 |
liver | 82% | 1130.46 | 185 / 226 | 37% | 14.06 | 150 / 406 |
skin | 72% | 1737.35 | 1304 / 1809 | 4% | 0.97 | 18 / 472 |
breast | 49% | 557.82 | 223 / 459 | 23% | 7.55 | 255 / 1118 |
ovary | 0% | 0 | 0 / 180 | 57% | 18.02 | 244 / 430 |
esophagus | 37% | 381.93 | 537 / 1445 | 13% | 2.42 | 23 / 183 |
uterus | 2% | 24.15 | 4 / 170 | 16% | 4.29 | 73 / 459 |
lung | 0% | 0.72 | 1 / 578 | 6% | 1.64 | 75 / 1155 |
muscle | 7% | 34.58 | 53 / 803 | 0% | 0 | 0 / 0 |
prostate | 4% | 10.64 | 10 / 245 | 2% | 6.83 | 12 / 502 |
bladder | 0% | 0 | 0 / 21 | 5% | 1.29 | 25 / 504 |
pancreas | 0% | 0.98 | 1 / 328 | 4% | 0.98 | 7 / 178 |
intestine | 0% | 0 | 0 / 966 | 2% | 0.24 | 8 / 527 |
stomach | 0% | 0.56 | 1 / 359 | 1% | 0.34 | 3 / 286 |
adipose | 1% | 5.03 | 14 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 2.28 | 6 / 1335 | 0% | 0 | 0 / 0 |
spleen | 0% | 1.04 | 1 / 241 | 0% | 0 | 0 / 0 |
heart | 0% | 0.55 | 1 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adrenal gland | 0% | 0 | 0 / 258 | 0% | 0 | 0 / 230 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0045329 | Biological process | carnitine biosynthetic process |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0005739 | Cellular component | mitochondrion |
GO_0008336 | Molecular function | gamma-butyrobetaine dioxygenase activity |
GO_0005506 | Molecular function | iron ion binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | BBOX1 |
Protein name | Gamma-butyrobetaine hydroxylase 1 Gamma-butyrobetaine hydroxylase (EC 1.14.11.1) Gamma-butyrobetaine dioxygenase (EC 1.14.11.1) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) |
Synonyms | BBOX BBH |
Description | FUNCTION: Catalyzes the formation of L-carnitine from gamma-butyrobetaine. |
Accessions | ENST00000263182.8 ENST00000533566.5 E9PKC9 ENST00000525090.1 Q1KLS6 ENST00000528583.5 O75936 Q1KLT3 ENST00000529202.5 |