Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 13 studies | 33% ± 13% | |
oligodendrocyte precursor cell | 8 studies | 29% ± 12% | |
glutamatergic neuron | 6 studies | 33% ± 19% | |
Mueller cell | 5 studies | 18% ± 3% | |
GABAergic neuron | 5 studies | 29% ± 12% | |
astrocyte | 4 studies | 29% ± 4% | |
neuron | 3 studies | 26% ± 12% | |
interneuron | 3 studies | 44% ± 23% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 10 studies | 30% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 15779.74 | 2638 / 2642 | 99% | 59.40 | 698 / 705 |
thymus | 38% | 580.17 | 245 / 653 | 81% | 12.62 | 489 / 605 |
prostate | 14% | 216.16 | 34 / 245 | 81% | 11.73 | 409 / 502 |
stomach | 72% | 4700.87 | 258 / 359 | 2% | 0.12 | 6 / 286 |
adrenal gland | 7% | 128.62 | 17 / 258 | 63% | 17.00 | 145 / 230 |
liver | 16% | 323.78 | 37 / 226 | 15% | 1.36 | 62 / 406 |
skin | 0% | 2.81 | 3 / 1809 | 18% | 1.31 | 85 / 472 |
lymph node | 0% | 0 | 0 / 0 | 17% | 0.79 | 5 / 29 |
uterus | 3% | 57.35 | 5 / 170 | 9% | 0.51 | 42 / 459 |
kidney | 2% | 28.56 | 2 / 89 | 10% | 0.79 | 86 / 901 |
bladder | 0% | 0 | 0 / 21 | 11% | 0.96 | 55 / 504 |
lung | 0% | 3.87 | 2 / 578 | 10% | 0.74 | 116 / 1155 |
peripheral blood | 10% | 193.95 | 96 / 929 | 0% | 0 | 0 / 0 |
ovary | 0% | 0 | 0 / 180 | 9% | 0.81 | 37 / 430 |
breast | 1% | 8.49 | 3 / 459 | 6% | 0.52 | 66 / 1118 |
pancreas | 0% | 4.09 | 1 / 328 | 5% | 0.82 | 9 / 178 |
eye | 0% | 0 | 0 / 0 | 5% | 0.55 | 4 / 80 |
intestine | 2% | 28.05 | 16 / 966 | 1% | 0.10 | 7 / 527 |
esophagus | 0% | 3.18 | 2 / 1445 | 2% | 0.24 | 4 / 183 |
spleen | 1% | 15.68 | 2 / 241 | 0% | 0 | 0 / 0 |
adipose | 0% | 1.91 | 1 / 1204 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 0 | 0 / 1335 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0005975 | Biological process | carbohydrate metabolic process |
GO_0050650 | Biological process | chondroitin sulfate proteoglycan biosynthetic process |
GO_0006486 | Biological process | protein glycosylation |
GO_0006024 | Biological process | glycosaminoglycan biosynthetic process |
GO_0008542 | Biological process | visual learning |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005576 | Cellular component | extracellular region |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0015018 | Molecular function | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity |
Gene name | B3GAT1 |
Protein name | Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (EC 2.4.1.135) (Beta-1,3-glucuronyltransferase 1) (Glucuronosyltransferase P) (GlcAT-P) (UDP-GlcUA:glycoprotein beta-1,3-glucuronyltransferase) (GlcUAT-P) |
Synonyms | GLCATP |
Description | FUNCTION: Involved in the biosynthesis of L2/HNK-1 carbohydrate epitope on glycoproteins. Can also play a role in glycosaminoglycan biosynthesis. Substrates include asialo-orosomucoid (ASOR), asialo-fetuin, and asialo-neural cell adhesion molecule. Requires sphingomyelin for activity: stearoyl-sphingomyelin was the most effective, followed by palmitoyl-sphingomyelin and lignoceroyl-sphingomyelin. Activity was demonstrated only for sphingomyelin with a saturated fatty acid and not for that with an unsaturated fatty acid, regardless of the length of the acyl group. . |
Accessions | ENST00000524765.1 [Q9P2W7-1] ENST00000392580.5 [Q9P2W7-1] ENST00000312527.9 [Q9P2W7-1] Q9P2W7 |