Insufficient scRNA-seq data for expression of ATRIP at single-cell level.
Insufficient scRNA-seq data for expression of ATRIP at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 647.28 | 1445 / 1445 | 100% | 6.83 | 183 / 183 |
prostate | 100% | 787.50 | 245 / 245 | 100% | 10.36 | 502 / 502 |
skin | 100% | 864.06 | 1809 / 1809 | 100% | 9.67 | 472 / 472 |
thymus | 100% | 931.07 | 653 / 653 | 100% | 9.52 | 604 / 605 |
breast | 100% | 764.16 | 459 / 459 | 100% | 13.69 | 1116 / 1118 |
uterus | 100% | 763.51 | 170 / 170 | 100% | 10.34 | 458 / 459 |
ovary | 100% | 688.31 | 180 / 180 | 100% | 7.06 | 429 / 430 |
bladder | 100% | 701.86 | 21 / 21 | 100% | 9.06 | 502 / 504 |
intestine | 100% | 586.33 | 966 / 966 | 99% | 7.56 | 523 / 527 |
stomach | 100% | 478.18 | 358 / 359 | 99% | 6.79 | 284 / 286 |
lung | 99% | 530.80 | 573 / 578 | 100% | 6.48 | 1153 / 1155 |
brain | 98% | 400.45 | 2581 / 2642 | 100% | 8.03 | 705 / 705 |
kidney | 100% | 429.16 | 89 / 89 | 98% | 4.57 | 880 / 901 |
pancreas | 99% | 330.67 | 325 / 328 | 98% | 5.95 | 175 / 178 |
adrenal gland | 100% | 532.91 | 258 / 258 | 97% | 5.54 | 224 / 230 |
liver | 100% | 312.18 | 226 / 226 | 97% | 4.77 | 393 / 406 |
adipose | 100% | 653.31 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 550.19 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 5.39 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 14.07 | 29 / 29 |
spleen | 100% | 714.92 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 9.88 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.94 | 1 / 1 |
muscle | 100% | 478.89 | 799 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 335.08 | 846 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 94% | 451.02 | 870 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006139 | Biological process | nucleobase-containing compound metabolic process |
GO_0006281 | Biological process | DNA repair |
GO_2000779 | Biological process | regulation of double-strand break repair |
GO_0000077 | Biological process | DNA damage checkpoint signaling |
GO_0070310 | Cellular component | ATR-ATRIP complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0070530 | Molecular function | K63-linked polyubiquitin modification-dependent protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | ATRIP |
Protein name | ATR interacting protein ATR interacting protein (Three prime repair exonuclease 1, isoform CRA_a) ATR-interacting protein (ATM and Rad3-related-interacting protein) |
Synonyms | TREX1 hCG_1997849 AGS1 |
Description | FUNCTION: Required for checkpoint signaling after DNA damage. Required for ATR expression, possibly by stabilizing the protein. . |
Accessions | ENST00000320211.10 [Q8WXE1-1] ENST00000412052.4 [Q8WXE1-3] ENST00000346691.9 [Q8WXE1-2] A0A0U1RQR9 A0A1W2PQ89 ENST00000639561.1 ENST00000634384.2 A0A0U1RQJ8 A0A0U1RQW3 A0A0U1RRM7 ENST00000635464.1 ENST00000635082.1 Q8WXE1 ENST00000635099.1 |