Name | Number of supported studies | Average coverage | |
---|---|---|---|
non-classical monocyte | 15 studies | 26% ± 11% | |
classical monocyte | 14 studies | 28% ± 11% | |
macrophage | 10 studies | 26% ± 9% | |
monocyte | 8 studies | 26% ± 8% | |
dendritic cell | 7 studies | 22% ± 12% | |
myeloid cell | 6 studies | 20% ± 3% | |
microglial cell | 6 studies | 28% ± 10% | |
B cell | 4 studies | 16% ± 1% | |
neutrophil | 3 studies | 24% ± 5% | |
conventional dendritic cell | 3 studies | 39% ± 16% | |
epithelial cell | 3 studies | 21% ± 6% | |
GABAergic neuron | 3 studies | 20% ± 2% | |
glutamatergic neuron | 3 studies | 26% ± 9% | |
oligodendrocyte precursor cell | 3 studies | 24% ± 4% | |
alveolar macrophage | 3 studies | 25% ± 9% | |
memory B cell | 3 studies | 17% ± 1% | |
naive B cell | 3 studies | 16% ± 1% | |
transit amplifying cell | 3 studies | 25% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 5375.17 | 653 / 653 | 99% | 9.36 | 599 / 605 |
uterus | 100% | 4943.71 | 170 / 170 | 97% | 10.55 | 444 / 459 |
bladder | 100% | 3706.81 | 21 / 21 | 97% | 9.81 | 487 / 504 |
esophagus | 97% | 3391.02 | 1404 / 1445 | 99% | 6.82 | 182 / 183 |
breast | 99% | 2913.63 | 453 / 459 | 96% | 9.51 | 1069 / 1118 |
kidney | 100% | 3788.60 | 89 / 89 | 94% | 9.94 | 844 / 901 |
intestine | 99% | 4241.45 | 957 / 966 | 94% | 6.54 | 496 / 527 |
lung | 100% | 8349.30 | 577 / 578 | 92% | 7.92 | 1065 / 1155 |
adrenal gland | 99% | 3593.21 | 256 / 258 | 91% | 4.72 | 209 / 230 |
stomach | 97% | 2677.85 | 350 / 359 | 92% | 5.75 | 263 / 286 |
ovary | 100% | 5205.98 | 180 / 180 | 89% | 5.31 | 382 / 430 |
prostate | 100% | 3985.69 | 244 / 245 | 88% | 4.82 | 441 / 502 |
liver | 94% | 1969.43 | 212 / 226 | 86% | 4.36 | 349 / 406 |
brain | 80% | 1355.93 | 2104 / 2642 | 99% | 10.52 | 700 / 705 |
skin | 94% | 6063.05 | 1702 / 1809 | 82% | 4.63 | 388 / 472 |
pancreas | 79% | 1426.15 | 260 / 328 | 97% | 9.37 | 172 / 178 |
lymph node | 0% | 0 | 0 / 0 | 100% | 13.92 | 29 / 29 |
peripheral blood | 100% | 24391.14 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 27669.06 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 18.84 | 1 / 1 |
adipose | 97% | 3046.96 | 1167 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 94% | 2265.43 | 1253 / 1335 | 0% | 0 | 0 / 0 |
heart | 90% | 1927.92 | 774 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 89% | 6.12 | 40 / 45 |
eye | 0% | 0 | 0 / 0 | 57% | 2.85 | 46 / 80 |
muscle | 20% | 279.15 | 159 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015031 | Biological process | protein transport |
GO_0006914 | Biological process | autophagy |
GO_0016236 | Biological process | macroautophagy |
GO_0000045 | Biological process | autophagosome assembly |
GO_0039689 | Biological process | negative stranded viral RNA replication |
GO_0034274 | Cellular component | Atg12-Atg5-Atg16 complex |
GO_0034045 | Cellular component | phagophore assembly site membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005776 | Cellular component | autophagosome |
Gene name | ATG16L2 |
Protein name | Protein Atg16l2 (APG16-like 2) (Autophagy-related protein 16-2) (WD repeat-containing protein 80) ATG16L2 protein Autophagy related 16 like 2 |
Synonyms | WDR80 |
Description | FUNCTION: May play a role in regulating epithelial homeostasis in an ATG16L1-dependent manner. . |
Accessions | ENST00000541367.5 H0YF72 ENST00000544490.5 H0YFC3 H0YFZ7 H0YGE3 ENST00000534905.5 ENST00000435507.6 ENST00000541554.1 ENST00000321297.10 [Q8NAA4-1] Q2VPK0 ENST00000538973.5 ENST00000541999.5 F5GWM4 ENST00000540222.5 ENST00000540567.1 ENST00000537837.5 H0YGJ8 Q8NAA4 F5H7B6 H0YG45 H0YFG0 F5GWZ9 ENST00000535830.5 H0YG67 |