Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 10 studies | 25% ± 8% | |
epithelial cell | 5 studies | 23% ± 4% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
endothelial cell | 3 studies | 28% ± 12% | |
astrocyte | 3 studies | 18% ± 1% | |
glutamatergic neuron | 3 studies | 29% ± 9% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 21% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 3689.10 | 21 / 21 | 100% | 20.82 | 504 / 504 |
prostate | 100% | 6003.29 | 245 / 245 | 100% | 26.13 | 502 / 502 |
uterus | 100% | 4215.03 | 170 / 170 | 100% | 23.63 | 459 / 459 |
intestine | 100% | 4160.32 | 966 / 966 | 100% | 22.68 | 526 / 527 |
lung | 100% | 3623.80 | 578 / 578 | 100% | 21.71 | 1151 / 1155 |
stomach | 100% | 3304.32 | 359 / 359 | 100% | 18.69 | 285 / 286 |
skin | 100% | 3808.37 | 1809 / 1809 | 100% | 17.20 | 470 / 472 |
ovary | 100% | 5156.85 | 180 / 180 | 100% | 22.42 | 428 / 430 |
esophagus | 100% | 3299.65 | 1445 / 1445 | 99% | 15.30 | 182 / 183 |
pancreas | 100% | 2688.04 | 328 / 328 | 99% | 23.71 | 177 / 178 |
breast | 100% | 3808.35 | 458 / 459 | 100% | 19.43 | 1114 / 1118 |
thymus | 100% | 5143.31 | 653 / 653 | 99% | 20.05 | 599 / 605 |
liver | 100% | 2226.41 | 226 / 226 | 99% | 14.40 | 400 / 406 |
adrenal gland | 100% | 2796.78 | 257 / 258 | 97% | 14.90 | 224 / 230 |
brain | 96% | 3082.53 | 2540 / 2642 | 100% | 22.21 | 705 / 705 |
kidney | 100% | 3824.06 | 89 / 89 | 95% | 22.05 | 853 / 901 |
lymph node | 0% | 0 | 0 / 0 | 100% | 28.50 | 29 / 29 |
spleen | 100% | 6330.33 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 21.15 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.22 | 1 / 1 |
blood vessel | 100% | 2764.04 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 2593.30 | 1194 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 4136.99 | 920 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 15.01 | 79 / 80 |
muscle | 98% | 1854.82 | 789 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 1915.40 | 836 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0072344 | Biological process | rescue of stalled ribosome |
GO_0036503 | Biological process | ERAD pathway |
GO_0070301 | Biological process | cellular response to hydrogen peroxide |
GO_0006515 | Biological process | protein quality control for misfolded or incompletely synthesized proteins |
GO_0016020 | Cellular component | membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0004521 | Molecular function | RNA endonuclease activity |
GO_0140101 | Molecular function | catalytic activity, acting on a tRNA |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ANKZF1 |
Protein name | tRNA endonuclease ANKZF1 (EC 3.1.-.-) (Ankyrin repeat and zinc finger domain-containing protein 1) (Zinc finger protein 744) Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 |
Synonyms | ZNF744 |
Description | FUNCTION: Endonuclease that cleaves polypeptidyl-tRNAs downstream of the ribosome-associated quality control (RQC) pathway to release incompletely synthesized polypeptides for degradation . The RQC pathway disassembles aberrantly stalled translation complexes to recycle or degrade the constituent parts . ANKZF1 acts downstream disassembly of stalled ribosomes and specifically cleaves off the terminal 3'-CCA nucleotides universal to all tRNAs from polypeptidyl-tRNAs, releasing (1) ubiquitinated polypeptides from 60S ribosomal subunit for degradation and (2) cleaved tRNAs . ANKZF1-cleaved tRNAs are then repaired and recycled by ELAC1 and TRNT1 . Also plays a role in the cellular response to hydrogen peroxide and in the maintenance of mitochondrial integrity under conditions of cellular stress . . |
Accessions | F8WD44 ENST00000410034.7 ENST00000436226.1 Q9H8Y5 C9K022 C9J5H7 ENST00000435521.5 C9JQZ3 ENST00000323348.10 ENST00000416565.1 ENST00000447157.5 ENST00000453432.5 B8ZZS4 ENST00000409849.5 C9JS61 |