ALPI report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
enterocyte	6 studies	29% ± 7%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
kidney	72%	38.31	64 / 89	43%	8.84	383 / 901
intestine	58%	1565.08	560 / 966	47%	2.94	247 / 527
stomach	1%	0.98	4 / 359	46%	7.16	132 / 286
liver	19%	4.45	44 / 226	16%	9.84	63 / 406
esophagus	2%	2.50	26 / 1445	27%	4.18	50 / 183
pancreas	0%	0.09	1 / 328	21%	2.54	38 / 178
bladder	0%	0	0 / 21	13%	0.45	68 / 504
uterus	2%	1.10	3 / 170	6%	0.30	28 / 459
lung	1%	0.20	5 / 578	6%	0.71	75 / 1155
ovary	2%	0.48	4 / 180	4%	0.17	18 / 430
skin	3%	1.24	53 / 1809	0%	0.00	1 / 472
breast	2%	1.37	9 / 459	0%	0.05	3 / 1118
brain	2%	0.49	42 / 2642	0%	0.00	1 / 705
spleen	2%	1.20	4 / 241	0%	0	0 / 0
thymus	1%	0.15	6 / 653	1%	0.02	4 / 605
prostate	1%	0.68	3 / 245	0%	0.00	1 / 502
eye	0%	0	0 / 0	1%	0.02	1 / 80
adipose	1%	0.47	15 / 1204	0%	0	0 / 0
heart	1%	0.20	7 / 861	0%	0	0 / 0
blood vessel	1%	0.31	9 / 1335	0%	0	0 / 0
muscle	1%	0.14	5 / 803	0%	0	0 / 0
peripheral blood	1%	0.08	5 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
adrenal gland	0%	0	0 / 258	0%	0	0 / 230
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1