Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 9 studies | 34% ± 14% | |
adipocyte | 8 studies | 31% ± 10% | |
retinal bipolar neuron | 4 studies | 31% ± 6% | |
ON-bipolar cell | 3 studies | 35% ± 8% | |
rod bipolar cell | 3 studies | 67% ± 15% | |
GABAergic neuron | 3 studies | 38% ± 6% | |
glutamatergic neuron | 3 studies | 46% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 33% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 97% | 741.99 | 2561 / 2642 | 92% | 6.30 | 651 / 705 |
adrenal gland | 76% | 163.93 | 195 / 258 | 72% | 3.44 | 166 / 230 |
breast | 88% | 861.52 | 403 / 459 | 26% | 0.58 | 288 / 1118 |
uterus | 89% | 315.70 | 152 / 170 | 11% | 0.24 | 52 / 459 |
adipose | 97% | 1136.85 | 1172 / 1204 | 0% | 0 | 0 / 0 |
heart | 83% | 498.94 | 718 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 72% | 3.41 | 21 / 29 |
spleen | 71% | 116.09 | 171 / 241 | 0% | 0 | 0 / 0 |
bladder | 57% | 101.86 | 12 / 21 | 8% | 0.13 | 38 / 504 |
intestine | 47% | 87.79 | 455 / 966 | 6% | 0.13 | 31 / 527 |
lung | 15% | 21.60 | 85 / 578 | 25% | 0.46 | 293 / 1155 |
thymus | 27% | 46.79 | 175 / 653 | 12% | 0.22 | 74 / 605 |
peripheral blood | 38% | 181.46 | 351 / 929 | 0% | 0 | 0 / 0 |
esophagus | 27% | 44.19 | 386 / 1445 | 9% | 0.18 | 17 / 183 |
stomach | 19% | 32.83 | 67 / 359 | 16% | 0.30 | 46 / 286 |
tonsil | 0% | 0 | 0 / 0 | 33% | 0.64 | 15 / 45 |
kidney | 3% | 7.36 | 3 / 89 | 26% | 0.50 | 231 / 901 |
blood vessel | 26% | 61.81 | 353 / 1335 | 0% | 0 | 0 / 0 |
skin | 5% | 9.16 | 89 / 1809 | 21% | 0.49 | 98 / 472 |
prostate | 18% | 22.80 | 43 / 245 | 4% | 0.06 | 21 / 502 |
pancreas | 0% | 0.87 | 1 / 328 | 12% | 0.21 | 22 / 178 |
ovary | 7% | 15.06 | 13 / 180 | 0% | 0.00 | 1 / 430 |
eye | 0% | 0 | 0 / 0 | 4% | 0.05 | 3 / 80 |
liver | 0% | 0 | 0 / 226 | 3% | 0.06 | 11 / 406 |
muscle | 3% | 4.43 | 21 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0015910 | Biological process | long-chain fatty acid import into peroxisome |
GO_2001280 | Biological process | positive regulation of unsaturated fatty acid biosynthetic process |
GO_0032000 | Biological process | positive regulation of fatty acid beta-oxidation |
GO_0009617 | Biological process | response to bacterium |
GO_0042760 | Biological process | very long-chain fatty acid catabolic process |
GO_1900016 | Biological process | negative regulation of cytokine production involved in inflammatory response |
GO_1990535 | Biological process | neuron projection maintenance |
GO_0000038 | Biological process | very long-chain fatty acid metabolic process |
GO_0043217 | Biological process | myelin maintenance |
GO_1903427 | Biological process | negative regulation of reactive oxygen species biosynthetic process |
GO_0007031 | Biological process | peroxisome organization |
GO_0006635 | Biological process | fatty acid beta-oxidation |
GO_0005778 | Cellular component | peroxisomal membrane |
GO_0005777 | Cellular component | peroxisome |
GO_0005829 | Cellular component | cytosol |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0005324 | Molecular function | long-chain fatty acid transmembrane transporter activity |
GO_0140359 | Molecular function | ABC-type transporter activity |
GO_0005524 | Molecular function | ATP binding |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0047617 | Molecular function | fatty acyl-CoA hydrolase activity |
GO_0042626 | Molecular function | ATPase-coupled transmembrane transporter activity |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | ABCD2 |
Protein name | ATP-binding cassette sub-family D member 2 (EC 3.1.2.-) (EC 7.6.2.-) (Adrenoleukodystrophy-like 1) (Adrenoleukodystrophy-related protein) (hALDR) |
Synonyms | ALDR ALD1 ALDL1 ALDRP |
Description | FUNCTION: ATP-dependent transporter of the ATP-binding cassette (ABC) family involved in the transport of very long chain fatty acid (VLCFA)-CoA from the cytosol to the peroxisome lumen . Like ABCD1 seems to have fatty acyl-CoA thioesterase (ACOT) and ATPase activities, according to this model, VLCFA-CoA as free VLCFA is transpoted in an ATP-dependent manner into peroxisomes after the hydrolysis of VLCFA-CoA mediated by the ACOT activity of ABCD2 (Probable) . Shows overlapping substrate specificities with ABCD1 toward saturated fatty acids (FA) and monounsaturated FA (MUFA) but has a distinct substrate preference for shorter VLCFA (C22:0) and polyunsaturated fatty acid (PUFA) such as C22:6-CoA and C24:6-CoA (in vitro) . Thus, may play a role in regulation of VLCFAs and energy metabolism namely, in the degradation and biosynthesis of fatty acids by beta-oxidation . . |
Accessions | Q9UBJ2 ENST00000308666.4 |