Studies | OmnibusX

Filter by metadata

cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

plasma cell

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

18 studies

64 datasets

5,327,697 cells

	Title	Total cells
1	A cell atlas of human thymic development defines T cell repertoire formation https://doi.org/10.1126/science.aay3224Deposited data# 255,901 cells Dataset 1: Figure 1 - A cell atlas of human thymic development defines T cell repertoire formation cell type: plasma cell expressed genes: AP3D1		Explore
2	A molecular cell atlas of the human lung from single cell RNA sequencing https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells Dataset 2: Krasnow Lab Human Lung Cell Atlas, Smart-seq2 cell type: Plasma expressed genes: AP3D1		Explore
3	A molecular single-cell lung atlas of lethal COVID-19 https://doi.org/10.1038/s41586-021-03569-1Deposited data# 116,313 cells Dataset 1: A molecular single-cell lung atlas of lethal COVID-19 cell type: Plasma cells expressed genes: AP3D1		Explore
4	Cells of the human intestinal tract mapped across space and time https://doi.org/10.1038/s41586-021-03852-1Deposited data# 428,469 cells Dataset 1: Total - Cells of the human intestinal tract mapped across space and time cell type: plasma cell expressed genes: AP3D1		Explore
5	Cross-tissue immune cell analysis reveals tissue-specific features in humans https://doi.org/10.1126/science.abl5197Deposited data# 329,762 cells Dataset 1: Global cell type: Plasma cells expressed genes: AP3D1		Explore
6	Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes https://doi.org/10.1016/j.immuni.2020.03.019Deposited data# 71,732 cells Dataset 1: Single-Cell Transcriptome Profiling of Immature Human Thymocytes cell type: Plasma_Cells expressed genes: AP3D1		Explore
7	Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis https://doi.org/10.1016/j.cell.2019.06.029Deposited data# 34,772 cells Dataset 1: Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis cell type: Plasma expressed genes: AP3D1		Explore
8	Local and systemic responses to SARS-CoV-2 infection in children and adults https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells Dataset 1: PBMC cell type: Plasma cells expressed genes: AP3D1 Dataset 2: Airway cell type: Plasma IgK Plasma IgL expressed genes: AP3D1		Explore
9	Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19 https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells Dataset 1: 49 years old male - Fresh PBMCs (2 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 3: 49 years old male - Fresh PBMCs (3 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 4: 66 years old female - Fresh PBMCs (2 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 5: 66 years old female - Airway Wash (2 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 7: 66 years old female - Fresh PBMCs (4 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 8: 74 years old female - Fresh PBMCs (3 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 9: 74 years old female - Fresh PBMCs (4 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 10: 74 years old female - Fresh PBMCs (7 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 11: 66 years old female - Fresh PBMCs (3 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 12: 74 years old female - Fresh PBMCs (8 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 14: 49 years old male - Fresh PBMCs (1 day post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 16: 82 years old female - Fresh PBMCs (1 day post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 18: 66 years old female - Fresh PBMCs (7 days post-intubation) cell type: plasma expressed genes: AP3D1 Dataset 25: 74 years old female - Airway Wash (5 days post-intubation) cell type: plasma expressed genes: AP3D1		Explore
10	Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells Dataset 1: Single-cell transcriptomic datasets of Renal cell carcinoma patients cell type: plasma cell expressed genes: AP3D1		Explore
11	Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies https://doi.org/10.1126/science.abo1984Deposited data# 826,733 cells Dataset 6: DCM/ACM heart cell atlas: Lymphoids cell type: Plasma expressed genes: AP3D1		Explore
12	Polybacterial intracellular coinfection of epithelial stem cells in periodontitis https://doi.org/10.1101/2023.08.23.554343Deposited data# 105,918 cells Dataset 1: An Integrated Single Cell Meta-atlas of Human Periodontitis cell type: Plasma cells expressed genes: AP3D1		Explore
13	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease https://doi.org/10.1016/j.devcel.2020.11.010Deposited data# 85,351 cells Dataset 2: Paediatric Human Gut (4-14y) cell type: Cycling plasma cell expressed genes: AP3D1		Explore
14	Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states https://doi.org/10.1038/s41590-021-01059-0Deposited data# 109,310 cells Dataset 4: healthy young bone marrow donor cell type: Plasma cells expressed genes: AP3D1		Explore
15	Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches https://doi.org/10.1016/j.cell.2021.12.018Deposited data# 167,598 cells Dataset 1: All cells from human liver dataset cell type: Plasma cells expressed genes: AP3D1		Explore
16	Spatially resolved multiomics of human cardiac niches https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells Dataset 1: Combined single cell and single nuclei RNA-Seq data - Heart Global cell type: B_plasma expressed genes: AP3D1		Explore
17	The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon https://doi.org/10.1016/j.immuni.2023.01.002Deposited data# 720,633 cells Dataset 3: colon immune cell type: Plasma cells expressed genes: AP3D1		Explore
18	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells Dataset 3: Lung Parenchyma cell type: Plasma_cells expressed genes: AP3D1		Explore

Published data collections