Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

neutrophil

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

20 studies

60 datasets

5,521,434 cells

	Title	Total cells
1	A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells Dataset 1: All cells cell type: neutrophil expressed genes: GHITM		Explore
2	A molecular cell atlas of the human lung from single cell RNA sequencing https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells Dataset 2: Krasnow Lab Human Lung Cell Atlas, Smart-seq2 cell type: Neutrophil expressed genes: GHITM		Explore
3	A spatially resolved single cell genomic atlas of the adult human breast https://doi.org/10.1038/s41586-023-06252-9Deposited data# 831,677 cells Dataset 1: scRNA-seq data - all cells cell type: Neutrophil expressed genes: GHITM		Explore
4	An atlas of healthy and injured cell states and niches in the human kidney https://doi.org/10.1038/s41586-023-05769-3Deposited data# 304,652 cells Dataset 1: Integrated Single-nucleus and Single-cell RNA-seq of the Adult Human Kidney cell type: Neutrophil expressed genes: GHITM		Explore
5	Blood and immune development in human fetal bone marrow and Down syndrome https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells Dataset 1: Fetal Bone Marrow (10x) cell type: neutrophil expressed genes: GHITM Dataset 3: Fetal Bone Marrow (10x) - Down Syndrome cell type: neutrophil expressed genes: GHITM Dataset 4: Human Fetal Bone Marrow (CITE-seq) cell type: neutrophil expressed genes: GHITM		Explore
6	Cells of the human intestinal tract mapped across space and time https://doi.org/10.1038/s41586-021-03852-1Deposited data# 428,469 cells Dataset 1: Total - Cells of the human intestinal tract mapped across space and time cell type: neutrophil expressed genes: GHITM		Explore
7	Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs new combination cancer therapy strategies https://doi.org/10.1038/s41590-023-01504-2Deposited data# 82,991 cells Dataset 1: Transcriptional connectivity of regulatory T cells in the tumor microenvironment informs novel combination cancer therapy strategies cell type: Neutrophil expressed genes: GHITM		Explore
8	Construction of a human cell landscape at single-cell level https://doi.org/10.1038/s41586-020-2157-4Deposited data# 599,926 cells Dataset 1: Construction of a human cell landscape at single-cell level cell type: Neutrophil Neutrophil (RPS high) expressed genes: GHITM		Explore
9	Generation of complex human induced pluripotent stem cell-derived bone marrow organoids https://doi.org/10.1038/s41592-024-02172-2Deposited data# 31,040 cells Dataset 1: Bone marrow organoids (BMO) cell type: neutrophil expressed genes: GHITM		Explore
10	Local and systemic responses to SARS-CoV-2 infection in children and adults https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells Dataset 2: Airway cell type: Neut expressed genes: GHITM		Explore
11	Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19 https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells Dataset 1: 49 years old male - Fresh PBMCs (2 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 2: 49 years old male - Airway Wash (2 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 3: 49 years old male - Fresh PBMCs (3 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 4: 66 years old female - Fresh PBMCs (2 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 5: 66 years old female - Airway Wash (2 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 6: 74 years old female - Airway Wash (3 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 7: 66 years old female - Fresh PBMCs (4 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 11: 66 years old female - Fresh PBMCs (3 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 13: 74 years old female - Airway Wash (1 day post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 14: 49 years old male - Fresh PBMCs (1 day post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 15: 66 years old female - Airway Wash (7 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 17: 74 years old female - Airway Wash (4 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 18: 66 years old female - Fresh PBMCs (7 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 19: 66 years old female - Airway Wash (3 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 20: 74 years old female - Airway Wash (6 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 21: 66 years old female - Airway Wash (4 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 22: 49 years old male - Airway Wash (1 day post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 23: 49 years old male - Airway Wash (3 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 24: 74 years old female - Airway Wash (8 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 25: 74 years old female - Airway Wash (5 days post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 26: 82 years old female - Airway Wash (1 day post-intubation) cell type: neutrophil expressed genes: GHITM Dataset 27: 74 years old female - Airway Wash (7 days post-intubation) cell type: neutrophil expressed genes: GHITM		Explore
12	Polybacterial intracellular coinfection of epithelial stem cells in periodontitis https://doi.org/10.1101/2023.08.23.554343Deposited data# 105,918 cells Dataset 1: An Integrated Single Cell Meta-atlas of Human Periodontitis cell type: Neutrophils expressed genes: GHITM		Explore
13	Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer https://doi.org/10.1016/j.ccell.2021.09.008Deposited data# 147,137 cells Dataset 1: Combined samples cell type: Neutrophil expressed genes: GHITM		Explore
14	Single cell derived mRNA signals across human kidney tumors https://doi.org/10.1038/s41467-021-23949-5Deposited data# 31,839 cells Dataset 1: fetal cell type: Neutrophil expressed genes: GHITM		Explore
15	Single cell profiling of COVID-19 patients: an international data resource from multiple tissues https://doi.org/10.1101/2020.11.20.20227355Deposited data# 97,499 cells Dataset 1: Autoimmunity PBMCs cell type: Neutrophil expressed genes: GHITM		Explore
16	Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors https://doi.org/10.1126/science.aat1699Deposited data# 40,268 cells Dataset 1: mature cell type: Neutrophil expressed genes: GHITM		Explore
17	Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches https://doi.org/10.1016/j.cell.2021.12.018Deposited data# 167,598 cells Dataset 1: All cells from human liver dataset cell type: Neutrophils expressed genes: GHITM		Explore
18	Spatially resolved multiomics of human cardiac niches https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells Dataset 1: Combined single cell and single nuclei RNA-Seq data - Heart Global cell type: Neut expressed genes: GHITM		Explore
19	Spatiotemporal immune zonation of the human kidney https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells Dataset 1: Mature kidney dataset: full cell type: Neutrophil expressed genes: GHITM Dataset 2: Fetal kidney dataset: full cell type: Neutrophil expressed genes: GHITM		Explore
20	The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon https://doi.org/10.1016/j.immuni.2023.01.002Deposited data# 720,633 cells Dataset 1: TI immune cell type: Neutrophils S100A8 S100A9 expressed genes: GHITM		Explore

Published data collections