Published data collections

A cell atlas of human thymic development defines T cell repertoire formation

https://doi.org/10.1126/science.aay3224Deposited data# 255,901 cells

A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells

A molecular cell atlas of the human lung from single cell RNA sequencing

https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells

A spatially resolved single cell genomic atlas of the adult human breast

https://doi.org/10.1038/s41586-023-06252-9Deposited data# 831,677 cells

Blood and immune development in human fetal bone marrow and Down syndrome

https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells

Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution

https://doi.org/10.1016/j.cell.2020.08.013Deposited data# 98,348 cells

Cells of the human intestinal tract mapped across space and time

https://doi.org/10.1038/s41586-021-03852-1Deposited data# 428,469 cells

Distinct microbial and immune niches of the human colon

https://doi.org/10.1038/s41590-020-0602-zDeposited data# 41,650 cells

Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19

https://doi.org/10.1126/sciimmunol.abd1554Deposited data# 59,572 cells

Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes

https://doi.org/10.1016/j.immuni.2020.03.019Deposited data# 71,732 cells

Local and systemic responses to SARS-CoV-2 infection in children and adults

https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells

Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer

https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells

Polybacterial intracellular coinfection of epithelial stem cells in periodontitis

https://doi.org/10.1101/2023.08.23.554343Deposited data# 105,918 cells

Single cell derived mRNA signals across human kidney tumors

https://doi.org/10.1038/s41467-021-23949-5Deposited data# 31,839 cells

Single-cell analysis of human B cell maturation predicts how antibody class switching shapes selection dynamics

https://doi.org/10.1126/sciimmunol.abe6291Deposited data# 32,607 cells

Single-cell multi-omics analysis of the immune response in COVID-19

https://doi.org/10.1038/s41591-021-01329-2Deposited data# 647,366 cells

Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes

https://doi.org/10.7554/eLife.62522Deposited data# 46,500 cells

Single-cell reconstruction of the early maternal–fetal interface in humans

https://doi.org/10.1038/s41586-018-0698-6Deposited data# 70,325 cells

Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy

https://doi.org/10.1016/j.ccell.2021.03.007Deposited data# 167,283 cells

Spatiotemporal immune zonation of the human kidney

https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells

The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon

https://doi.org/10.1016/j.immuni.2023.01.002Deposited data# 720,633 cells

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

https://doi.org/10.1126/scitranslmed.abh2624Deposited data# 600,929 cells

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells