Published data collections

Filter by metadata
cell type (236)
condition (31)
development stage (6)
technology (12)
tissue (35)
myeloid cell
B cell
CD16-negative, CD56-bright natural killer cell, human
CD16-positive, CD56-dim natural killer cell, human
CD4-positive helper T cell
CD4-positive, alpha-beta T cell
CD4-positive, alpha-beta cytotoxic T cell
CD4-positive, alpha-beta memory T cell
CD8-positive, alpha-beta T cell
CD8-positive, alpha-beta memory T cell
GABAergic amacrine cell
GABAergic interneuron
GABAergic neuron
H1 horizontal cell
H2 horizontal cell
Hofbauer cell
IgA plasma cell
IgG plasma cell
IgM plasma cell
Kupffer cell
Langerhans cell
M cell of gut
Merkel cell
Mueller cell
OFF-bipolar cell
ON-bipolar cell
Purkinje cell
Schwann cell
T cell
T follicular helper cell
T-helper 1 cell
T-helper 17 cell
T-helper 2 cell
abnormal cell
acinar cell
adipocyte
adventitial cell
airway submucosal gland
alveolar macrophage
amacrine cell
astrocyte
basal cell
basophil
brush cell
capillary endothelial cell
cardiac muscle cell
central memory CD4-positive, alpha-beta T cell
central memory CD8-positive, alpha-beta T cell
chandelier cell
cholangiocyte
chondrocyte
ciliated cell
classical monocyte
club cell
colon epithelial cell
common lymphoid progenitor
common myeloid progenitor
cone retinal bipolar cell
connective tissue cell
conventional dendritic cell
cortical interneuron
dendritic cell
deuterosomal cell
differentiation-committed oligodendrocyte precursor
dopaminergic neuron
double negative thymocyte
double-positive, alpha-beta thymocyte
duct epithelial cell
early lymphoid progenitor
effector CD4-positive, alpha-beta T cell
effector CD8-positive, alpha-beta T cell
effector memory CD4-positive, alpha-beta T cell
effector memory CD4-positive, alpha-beta T cell, terminally differentiated
effector memory CD8-positive, alpha-beta T cell
effector memory CD8-positive, alpha-beta T cell, terminally differentiated
endocardial cell
endocrine cell
endothelial cell
endothelial cell of artery
endothelial cell of lymphatic vessel
endothelial cell of sinusoid
endothelial cell of vascular tree
endothelial stalk cell
enteric neuron
enterochromaffin-like cell
enterocyte
enteroendocrine cell
eosinophil
ependymal cell
epithelial cell
epithelial cell of proximal tubule
epithelial cell of thymus
erythroblast
erythrocyte
erythroid lineage cell
exhausted T cell
extravillous trophoblast
fibroblast
follicular B cell
follicular dendritic cell
foveolar cell of stomach
gamma-delta T cell
germinal center B cell
glandular epithelial cell
glial cell
glomerular endothelial cell
glutamatergic neuron
glycinergic amacrine cell
goblet cell
granule cell
granulocyte
granulocyte monocyte progenitor cell
granulosa cell
group 2 innate lymphoid cell
group 3 innate lymphoid cell
hematopoietic precursor cell
hematopoietic stem cell
hepatic stellate cell
hepatocyte
hillock cell
immature B cell
inflammatory macrophage
inhibitory interneuron
innate lymphoid cell
intermediate monocyte
interneuron
interstitial cell of Cajal
intestinal crypt stem cell
intraepithelial lymphocyte
ionocyte
keratinocyte
kidney connecting tubule epithelial cell
kidney distal convoluted tubule epithelial cell
kidney failure
kidney loop of Henle epithelial cell
leukocyte
luminal adaptive secretory precursor cell of mammary gland
luminal cell of prostate epithelium
luminal hormone-sensing cell of mammary gland
lymphangioblast
lymphocyte
macroglial cell
macrophage
mast cell
mature NK T cell
medium spiny neuron
megakaryocyte
megakaryocyte-erythroid progenitor cell
melanocyte
memory B cell
mesangial cell
mesothelial cell
microglial cell
monocyte
monocyte-derived dendritic cell
mononuclear phagocyte
motor neuron
mucosal invariant T cell
mucus secreting cell
mural cell
muscle cell
myoepithelial cell
myofibroblast cell
naive B cell
naive thymus-derived CD4-positive, alpha-beta T cell
naive thymus-derived CD8-positive, alpha-beta T cell
natural killer cell
neural crest cell
neural progenitor cell
neuroblast (sensu Vertebrata)
neuroendocrine cell
neuron
neutrophil
non-classical monocyte
oligodendrocyte
oligodendrocyte precursor cell
osteoclast
pancreatic A cell
pancreatic D cell
pancreatic PP cell
pancreatic ductal cell
pancreatic epsilon cell
pancreatic stellate cell
paneth cell
papillary tips cell
parietal epithelial cell
peptic cell
pericyte
placental villous trophoblast
plasma cell
plasmablast
plasmacytoid dendritic cell
platelet
pneumocyte
podocyte
pre-conventional dendritic cell
preadipocyte
precursor B cell
precursor cell
pro-B cell
pro-T cell
progenitor cell
progenitor cell of mammary luminal epithelium
pyramidal neuron
radial glial cell
regulatory T cell
renal alpha-intercalated cell
renal beta-intercalated cell
renal intercalated cell
renal principal cell
respiratory goblet cell
respiratory suprabasal cell
retina horizontal cell
retinal bipolar neuron
retinal cone cell
retinal ganglion cell
retinal pigment epithelial cell
retinal rod cell
rod bipolar cell
secretory cell
serous secreting cell
smooth muscle cell
squamous epithelial cell
stratified epithelial cell
syncytiotrophoblast
syncytiotrophoblast cell
thymocyte
tip cell
tissue-resident macrophage
transit amplifying cell
type B pancreatic cell
type I pneumocyte
type II pneumocyte
unipolar brush cell
urothelial cell
vein endothelial cell
Filter by expression
SNN
9 studies
Studies44 datasets
1,685,162 cells
Title
Total cells
1

A human breast atlas integrating single-cell proteomics and transcriptomics

https://doi.org/10.1016/j.devcel.2022.05.003Deposited data# 52,681 cells

Dataset 1: Single-Cell RNA Sequencing of Breast Tissues: Cell Subtypes and Cancer Risk Factors

cell type:
M
expressed genes:
SNN
Explore
2

A single-cell and spatially resolved atlas of human breast cancers

https://doi.org/10.1038/s41588-021-00911-1Deposited data# 100,064 cells

Dataset 1: A single-cell and spatially-resolved atlas of human breast cancers

cell type:
Cycling_Myeloid
Myeloid_c1_LAM1_FABP5
Myeloid_c2_LAM2_APOE
expressed genes:
SNN
Explore
3

A spatially resolved single cell genomic atlas of the adult human breast

https://doi.org/10.1038/s41586-023-06252-9Deposited data# 831,677 cells

Dataset 1: scRNA-seq data - all cells

cell type:
mye-prol
expressed genes:
SNN
Explore
4

Blood and immune development in human fetal bone marrow and Down syndrome

https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells

Dataset 1: Fetal Bone Marrow (10x)

cell type:
myelocyte
expressed genes:
SNN
Explore
5

Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19

https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells

Dataset 1: 49 years old male - Fresh PBMCs (2 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 3: 49 years old male - Fresh PBMCs (3 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 4: 66 years old female - Fresh PBMCs (2 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 5: 66 years old female - Airway Wash (2 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 6: 74 years old female - Airway Wash (3 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 7: 66 years old female - Fresh PBMCs (4 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 8: 74 years old female - Fresh PBMCs (3 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 10: 74 years old female - Fresh PBMCs (7 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 13: 74 years old female - Airway Wash (1 day post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 14: 49 years old male - Fresh PBMCs (1 day post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 15: 66 years old female - Airway Wash (7 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 16: 82 years old female - Fresh PBMCs (1 day post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 17: 74 years old female - Airway Wash (4 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 18: 66 years old female - Fresh PBMCs (7 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 19: 66 years old female - Airway Wash (3 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 20: 74 years old female - Airway Wash (6 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 21: 66 years old female - Airway Wash (4 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 22: 49 years old male - Airway Wash (1 day post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 24: 74 years old female - Airway Wash (8 days post-intubation)

cell type:
myeloid
expressed genes:
SNN

Dataset 27: 74 years old female - Airway Wash (7 days post-intubation)

cell type:
myeloid
expressed genes:
SNN
Explore
6

Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

https://doi.org/10.1038/s41588-021-00972-2Deposited data# 218,979 cells

Dataset 1: Non-pregnant Uterus (Endometrium - All)

cell type:
Myeloid
expressed genes:
SNN
Explore
7

Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma

https://doi.org/10.1016/j.celrep.2017.10.030Deposited data# 3,589 cells

Dataset 1: Infiltrating Neoplastic Cells Human Glioblastoma

cell type:
myeloid cell
expressed genes:
SNN
Explore
8

Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease

https://doi.org/10.1016/j.devcel.2020.11.010Deposited data# 85,351 cells

Dataset 2: Paediatric Human Gut (4-14y)

cell type:
Cycling myeloid cells
expressed genes:
SNN
Explore
9

Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states

https://doi.org/10.1038/s41590-021-01059-0Deposited data# 109,310 cells

Dataset 4: healthy young bone marrow donor

cell type:
Myelocytes
expressed genes:
SNN
Explore