Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

myeloid cell

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

13 studies

46 datasets

2,073,928 cells

	Title	Total cells
1	A human breast atlas integrating single-cell proteomics and transcriptomics https://doi.org/10.1016/j.devcel.2022.05.003Deposited data# 52,681 cells Dataset 1: Single-Cell RNA Sequencing of Breast Tissues: Cell Subtypes and Cancer Risk Factors cell type: M expressed genes: HDGFL3		Explore
2	A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells Dataset 1: All cells cell type: promonocyte promyelocyte expressed genes: HDGFL3		Explore
3	A single-cell comparison of adult and fetal human epicardium defines the age-associated changes in epicardial activity https://doi.org/10.1038/s44161-022-00183-wDeposited data# 60,668 cells Dataset 1: Integrated adult and foetal hearts cell type: Myeloid_LYVE+ Myeloid_Proliferating expressed genes: HDGFL3		Explore
4	A spatially resolved single cell genomic atlas of the adult human breast https://doi.org/10.1038/s41586-023-06252-9Deposited data# 831,677 cells Dataset 1: scRNA-seq data - all cells cell type: mye-prol expressed genes: HDGFL3 Dataset 2: snRNA-seq data - all cells cell type: Myeloid expressed genes: HDGFL3		Explore
5	Abdominal White Adipose Tissue https://cellxgene.cziscience.com/collections/6b701826-37bb-4356-9792-ff41fc4c3161Deposited data# 72,335 cells Dataset 1: 22 integrated samples cell type: Myeloid Cells (Monocytes, Neutrophils, Macrophages) expressed genes: HDGFL3		Explore
6	Blood and immune development in human fetal bone marrow and Down syndrome https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells Dataset 1: Fetal Bone Marrow (10x) cell type: myelocyte expressed genes: HDGFL3 Dataset 3: Fetal Bone Marrow (10x) - Down Syndrome cell type: myelocyte expressed genes: HDGFL3		Explore
7	Generation of complex human induced pluripotent stem cell-derived bone marrow organoids https://doi.org/10.1038/s41592-024-02172-2Deposited data# 31,040 cells Dataset 1: Bone marrow organoids (BMO) cell type: mon. mac. expressed genes: HDGFL3		Explore
8	Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration https://doi.org/10.1016/j.celrep.2019.12.082Deposited data# 100,055 cells Dataset 1: All cell types of human eye cell type: myeloid cell expressed genes: HDGFL3		Explore
9	Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19 https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells Dataset 1: 49 years old male - Fresh PBMCs (2 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 2: 49 years old male - Airway Wash (2 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 3: 49 years old male - Fresh PBMCs (3 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 4: 66 years old female - Fresh PBMCs (2 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 5: 66 years old female - Airway Wash (2 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 6: 74 years old female - Airway Wash (3 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 7: 66 years old female - Fresh PBMCs (4 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 8: 74 years old female - Fresh PBMCs (3 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 10: 74 years old female - Fresh PBMCs (7 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 11: 66 years old female - Fresh PBMCs (3 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 12: 74 years old female - Fresh PBMCs (8 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 13: 74 years old female - Airway Wash (1 day post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 14: 49 years old male - Fresh PBMCs (1 day post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 15: 66 years old female - Airway Wash (7 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 17: 74 years old female - Airway Wash (4 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 18: 66 years old female - Fresh PBMCs (7 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 19: 66 years old female - Airway Wash (3 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 20: 74 years old female - Airway Wash (6 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 21: 66 years old female - Airway Wash (4 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 22: 49 years old male - Airway Wash (1 day post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 23: 49 years old male - Airway Wash (3 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 24: 74 years old female - Airway Wash (8 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 25: 74 years old female - Airway Wash (5 days post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 26: 82 years old female - Airway Wash (1 day post-intubation) cell type: myeloid expressed genes: HDGFL3 Dataset 27: 74 years old female - Airway Wash (7 days post-intubation) cell type: myeloid expressed genes: HDGFL3		Explore
10	Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro https://doi.org/10.1038/s41588-021-00972-2Deposited data# 218,979 cells Dataset 1: Non-pregnant Uterus (Endometrium - All) cell type: Myeloid expressed genes: HDGFL3		Explore
11	Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma https://doi.org/10.1016/j.celrep.2017.10.030Deposited data# 3,589 cells Dataset 1: Infiltrating Neoplastic Cells Human Glioblastoma cell type: myeloid cell expressed genes: HDGFL3		Explore
12	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease https://doi.org/10.1016/j.devcel.2020.11.010Deposited data# 85,351 cells Dataset 2: Paediatric Human Gut (4-14y) cell type: Cycling myeloid cells expressed genes: HDGFL3		Explore
13	Spatial multi-omic map of human myocardial infarction https://doi.org/10.1038/s41586-022-05060-xDeposited data# 191,795 cells Dataset 1: All-snRNA-Spatial multi-omic map of human myocardial infarction cell type: Myeloid expressed genes: HDGFL3		Explore

Published data collections