Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

macrophage

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

12 studies

18 datasets

2,945,837 cells

	Title	Total cells
1	A molecular cell atlas of the human lung from single cell RNA sequencing https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells Dataset 1: Krasnow Lab Human Lung Cell Atlas, 10X cell type: Macrophage Proliferating Macrophage expressed genes: SCGB1A1 Dataset 2: Krasnow Lab Human Lung Cell Atlas, Smart-seq2 cell type: Macrophage expressed genes: SCGB1A1		Explore
2	A molecular single-cell lung atlas of lethal COVID-19 https://doi.org/10.1038/s41586-021-03569-1Deposited data# 116,313 cells Dataset 1: A molecular single-cell lung atlas of lethal COVID-19 cell type: Monocyte-derived macrophages Transitioning MDM expressed genes: SCGB1A1		Explore
3	A spatially resolved atlas of the human lung characterizes a gland-associated immune niche https://doi.org/10.1038/s41588-022-01243-4Deposited data# 193,108 cells Dataset 1: All cells and nuclei cell type: Macro_AW_CX3CR1 Macro_CCL Macro_CHIT1 Macro_dividing Macro_intermediate Macro_interstitial Macro_intravascular expressed genes: SCGB1A1		Explore
4	An integrated cell atlas of the lung in health and disease https://doi.org/10.1038/s41591-023-02327-2Deposited data# 584,944 cells Dataset 1: An integrated cell atlas of the human lung in health and disease (core) cell type: Interstitial Mph perivascular Monocyte-derived Mph expressed genes: SCGB1A1		Explore
5	Dysregulated lung stroma drives emphysema exacerbation by potentiating resident lymphocytes to suppress an epithelial stem cell reservoir https://doi.org/10.1016/j.immuni.2023.01.032Deposited data# 57,747 cells Dataset 1: immune cells cell type: Macrophage expressed genes: SCGB1A1		Explore
6	Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19 https://doi.org/10.1016/j.cell.2021.07.023Deposited data# 32,588 cells Dataset 1: Nasopharynx cell type: FFAR4 high Macrophages Interferon Responsive Macrophages ITGAX high Macrophages MSR1 C1QB high Macrophages expressed genes: SCGB1A1		Explore
7	Integrated analysis of multimodal single-cell data (version 2) https://doi.org/10.1016/j.cell.2021.04.048Deposited data# 584,884 cells Dataset 1: Human - Lung v2 (HLCA) cell type: Monocyte-derived M�� expressed genes: SCGB1A1		Explore
8	Local and systemic responses to SARS-CoV-2 infection in children and adults https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells Dataset 2: Airway cell type: Mac Mac activated expressed genes: SCGB1A1		Explore
9	Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer https://doi.org/10.1016/j.ccell.2021.09.008Deposited data# 147,137 cells Dataset 1: Combined samples cell type: Macrophage expressed genes: SCGB1A1		Explore
10	Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes https://doi.org/10.7554/eLife.62522Deposited data# 46,500 cells Dataset 1: Single-cell multiomic profiling of human lungs across age groups cell type: Interstitial macrophages expressed genes: SCGB1A1		Explore
11	Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function https://doi.org/10.1126/science.abl4290Deposited data# 209,126 cells Dataset 1: Single-nucleus cross-tissue molecular reference maps to decipher disease gene function cell type: Immune (LAMs) Immune (macrophage activated) Immune (macrophage I) Immune (macrophage II) Immune (macrophage III) Immune (macrophage) expressed genes: SCGB1A1		Explore
12	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells Dataset 3: Lung Parenchyma cell type: Macrophage_Dividing Macrophage_MARCOneg Macrophage_MARCOpos expressed genes: SCGB1A1		Explore

Published data collections