Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

glutamatergic neuron

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

13 studies

30 datasets

2,148,823 cells

	Title	Total cells
1	Brain matters: Unveiling the Distinct Contributions of Region, Age, and Sex to Glia diversity and CNS Function https://doi.org/10.1186/s40478-023-01568-zDeposited data# 45,528 cells Dataset 1: white matter - all cells cell type: Ex_1 Ex_2 Ex_3 Ex_4		Explore
2	Cell type-specific effects of age and sex on human cortical neurons https://doi.org/10.1101/2023.11.11.566717Deposited data# 37,121 cells Dataset 1: snmCT-seq of human dorsolateral prefrontal cortex (Brodmann area 46) cell type: L2-4IT_CUX2 L3-5IT_RORB_PLCH1 L4-5IT_RORB_ARHGAP15 L4-5IT_RORB_LRRK1 L4-5IT_RORB_TSHZ2 L56NP_TLE4_TSHZ2 L5ET_FEZF2_ADRA1A L6b_TLE4_NXPH4 L6CT_TLE4_FAM95C L6IT_THEMIS_CUX1 L6IT_THEMIS_LINC00343		Explore
3	Cellular development and evolution of the mammalian cerebellum https://doi.org/10.1038/s41586-023-06884-xDeposited data# 180,956 cells Dataset 1: snRNA-seq data for human cerebella from 9-12 developmental stages cell type: glut_DN		Explore
4	Comparative transcriptomics reveals human-specific cortical features https://doi.org/10.1126/science.ade9516Deposited data# 156,285 cells Dataset 1: Human: Great apes study cell type: L2/3 IT L4 IT L5 ET L5 IT L5/6 NP L6 CT L6 IT L6 IT Car3 L6b		Explore
5	Cryptic exon detection and transcriptomic changes revealed in single-nuclei RNA sequencing of C9ORF72 patients spanning the ALS-FTD spectrum https://doi.org/10.1007/s00401-023-02599-5Deposited data# 461,290 cells Dataset 1: Frontal cortex samples from C9-ALS, C9-ALS/FTD and age matched control brains cell type: L2-L3 Intratelencephalic L3-L5 Intratelencephalic Type 1 L3-L5 Intratelencephalic Type 2 L5 Extratelencephalic L5-L6 Near Projecting L6 Corticothalamic / L6B L6 Intratelencephalic - Type 1 L6 Intratelencephalic - Type 2 Dataset 2: Occipital cortex samples from C9-ALS, C9-ALS/FTD and age matched control brains cell type: Excitatory_1 Excitatory_10 Excitatory_2 Excitatory_3 Excitatory_4 Excitatory_5 Excitatory_6 Excitatory_7 Excitatory_8 Excitatory_9 Dataset 3: Frontal cortex samples from C9-FTD and age matched control brains cell type: L2-L3 Intratelencephalic L3-L5 Intratelencephalic Type 1 L3-L5 Intratelencephalic Type 2 L5 Extratelencephalic L5-L6 Near Projecting L6 Corticothalamic / L6B L6 Intratelencephalic - Type 1 L6 Intratelencephalic - Type 2 Dataset 4: Occipital cortex samples from C9-FTD and age matched control brains cell type: Excitatory_1 Excitatory_2 Excitatory_3 Excitatory_4 Excitatory_5 Excitatory_6 Excitatory_7 Excitatory_8 Excitatory_9		Explore
6	Dysregulation of brain and choroid plexus cell types in severe COVID-19 https://doi.org/10.1038/s41586-021-03710-0Deposited data# 65,309 cells Dataset 1: A total of 38,217 droplet-based single-nucleus transcriptomes profiled across 14 cell types in the frontal cortex cell type: L2/3 excitatory neuron L4 excitatory neuron L5/6 CC excitatory neuron L5/6 excitatory neuron		Explore
7	Early role for a Na+,K+-ATPase (ATP1A3) in brain development https://doi.org/10.1073/pnas.2023333118Deposited data# 170,525 cells Dataset 1: Midgestational human neocortex cells cell type: EN.1_IZ_[NEUROD1] EN.2_iCP_[TBR1] EN.3_oCP_[SATB2] EN.4_SP_[CRYM/LPL] Dataset 2: Infant human neocortex cells cell type: EN0_L6-SP_NR4A2 EN1_L2-3_DCC EN1_L5-6_CLSTN2 EN1_L6_FOXP2 EN2_L2-3_CUX2 EN2_L2-3-6_CBLN2 EN3_L5-6_COL24A1 EN3_L5-6_HTR2C EN3_L5-6-SP_TLE4 EN4_L2-3_SERPINE2 EN4_L4_RORB EN4_L5-6_PCP4		Explore
8	Intratumoral heterogeneity in recurrent pediatric pilocytic astrocytomas https://explore.data.humancellatlas.org/projects/575c0ad9-c78e-469b-9fdf-9a68dd881137Deposited data# 35,637 cells Dataset 1: Intratumoral heterogeneity in recurrent pediatric pilocytic astrocytomas cell type: Excitatory neurons		Explore
9	Molecular characterization of selectively vulnerable neurons in Alzheimer's Disease https://doi.org/10.1038/s41593-020-00764-7Deposited data# 106,136 cells Dataset 1: Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Superior frontal gyrus cell type: Inh Dataset 2: Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Entorhinal Cortex cell type: Exc		Explore
10	Molecular signatures underlying neurofibrillary tangle susceptibility in Alzheimer’s disease https://doi.org/10.1016/j.neuron.2022.06.021Deposited data# 119,326 cells Dataset 1: Single-soma transcriptomics of tangle-bearing neurons in Alzheimer’s disease - Excitatory cell type: Ex01_CUX2-LAMP5 (L2-L3) Ex02_CUX2-COL5A2 (L2-L4) Ex03_RORB-MME (L4-L5) Ex04_RORB-GABRG1 (L4-L5) Ex05_RORB-ADGRLA (L5) Ex06_RORB-PCP4-RPRM (L5) Ex07_RORB-PCP4 (L5) Ex08_FEZF2-PCP4-ROBO3 (L5) Ex09_FEZF2-ADRA1A (L5b) Ex10_THEMIS (L5-6) Ex11_THEMIS-NTNG2 (L6) Ex12_FEZF2-SYT6 (L6) Ex13_FEZF2-SEMA3D (L6b)		Explore
11	Multi-omic profiling of the developing human cerebral cortex at the single cell level https://doi.org/10.1126/sciadv.adg3754Deposited data# 45,549 cells Dataset 1: 10x scRNA-seq from human cortex cell type: EN EN-fetal-early EN-fetal-late		Explore
12	Protracted neuronal recruitment in the temporal lobes of young children https://doi.org/10.1038/s41586-023-06981-xDeposited data# 153,005 cells Dataset 1: Subpallial germinal zones and the developing human entorhinal cortex cell type: Excitatory Neurons Dataset 3: EC Stream Region at 14 days of age cell type: Young excitatory neurons		Explore
13	Single-cell genomic profiling of human dopamine neurons identifies a population that selectively degenerates in Parkinson’s disease https://doi.org/10.1038/s41593-022-01061-1Deposited data# 572,156 cells Dataset 3: Human Non-DA Neurons 10x scRNA-seq cell type: Ex_CYP2J2 Ex_EBF2_CTC-552D5.1 Ex_LAMP5_BAIAP3 Ex_LAMP5_NTNG2 Ex_MYO5B Ex_OPRD1 Ex_POSTN Ex_PPP1R1C Ex_SATB2 Ex_VWA5B1_CALB1		Explore

Published data collections