Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

fibroblast

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

13 studies

24 datasets

2,424,455 cells

	Title	Total cells
1	A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells Dataset 1: All cells cell type: bronchus fibroblast of lung fibroblast of lung pulmonary interstitial fibroblast expressed genes: HAPLN1		Explore
2	A single-cell comparison of adult and fetal human epicardium defines the age-associated changes in epicardial activity https://doi.org/10.1038/s44161-022-00183-wDeposited data# 60,668 cells Dataset 1: Integrated adult and foetal hearts cell type: Fibroblast-like Fibroblasts Immature_FB-like expressed genes: HAPLN1		Explore
3	A spatially resolved atlas of the human lung characterizes a gland-associated immune niche https://doi.org/10.1038/s41588-022-01243-4Deposited data# 193,108 cells Dataset 1: All cells and nuclei cell type: Fibro_alveolar Fibro_immune_recruiting Fibro_peribronchial Fibro_perichondrial NAF_endoneurial NAF_perineurial expressed genes: HAPLN1		Explore
4	Blood and immune development in human fetal bone marrow and Down syndrome https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells Dataset 1: Fetal Bone Marrow (10x) cell type: arteriolar fibroblast endosteal fibroblast expressed genes: HAPLN1		Explore
5	Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade https://doi.org/10.1101/2021.09.17.21263540Deposited data# 89,849 cells Dataset 1: 3-prime FGID data cell type: fibroblast expressed genes: HAPLN1		Explore
6	Construction of a human cell landscape at single-cell level https://doi.org/10.1038/s41586-020-2157-4Deposited data# 599,926 cells Dataset 1: Construction of a human cell landscape at single-cell level cell type: Fetal fibroblast Fibroblast expressed genes: HAPLN1		Explore
7	Early infection response of the first trimester human placenta at single-cell scale https://doi.org/10.1101/2023.01.02.522155Deposited data# 158,978 cells Dataset 1: Placenta Infection cell type: F F_p F_sm expressed genes: HAPLN1		Explore
8	Single-Cell Analysis of Crohn’s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy https://doi.org/10.1016/j.cell.2019.08.008Deposited data# 32,458 cells Dataset 1: Ileum cell type: Fibs expressed genes: HAPLN1		Explore
9	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease https://doi.org/10.1016/j.devcel.2020.11.010Deposited data# 85,351 cells Dataset 2: Paediatric Human Gut (4-14y) cell type: S1 fibroblasts S2 fibroblasts S4 fibroblasts expressed genes: HAPLN1		Explore
10	Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes https://doi.org/10.7554/eLife.62522Deposited data# 46,500 cells Dataset 1: Single-cell multiomic profiling of human lungs across age groups cell type: matrix fibroblast 1 matrix fibroblast 2 expressed genes: HAPLN1		Explore
11	Single-cell reconstruction of the early maternal–fetal interface in humans https://doi.org/10.1038/s41586-018-0698-6Deposited data# 70,325 cells Dataset 1: Pregnant Uterus (All) cell type: fFB1 fFB2 expressed genes: HAPLN1		Explore
12	Spatiotemporal immune zonation of the human kidney https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells Dataset 2: Fetal kidney dataset: full cell type: Fibroblast 1 Fibroblast 2 Proliferating fibroblast expressed genes: HAPLN1		Explore
13	The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon https://doi.org/10.1016/j.immuni.2023.01.002Deposited data# 720,633 cells Dataset 5: TI stromal cell type: Activated fibroblasts CCL19 ADAMADEC1 Fibroblasts ADAMDEC1 Fibroblasts KCNN3 LY6H Fibroblasts NPY SLITRK6 Fibroblasts SFRP2 SLPI Fibroblasts SMOC2 PTGIS expressed genes: HAPLN1 Dataset 6: colon stromal cell type: Activated fibroblasts CCL19 ADAMADEC1 Fibroblasts ADAMDEC1 Fibroblasts KCNN3 LY6H Fibroblasts NPY SLITRK6 Fibroblasts SFRP2 SLPI Fibroblasts SMOC2 PTGIS Inflammatory fibroblasts IL11 CHI3L1 expressed genes: HAPLN1		Explore

scRNA-seq studies - Human