Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

fibroblast

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

17 studies

32 datasets

4,787,954 cells

	Title	Total cells
1	A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells Dataset 1: All cells cell type: bronchus fibroblast of lung fibroblast of lung pulmonary interstitial fibroblast expressed genes: CADM3		Explore
2	A spatially resolved atlas of the human lung characterizes a gland-associated immune niche https://doi.org/10.1038/s41588-022-01243-4Deposited data# 193,108 cells Dataset 1: All cells and nuclei cell type: Fibro_alveolar Fibro_immune_recruiting Fibro_peribronchial Fibro_perichondrial NAF_endoneurial NAF_perineurial expressed genes: CADM3		Explore
3	An integrated cell atlas of the lung in health and disease https://doi.org/10.1038/s41591-023-02327-2Deposited data# 584,944 cells Dataset 1: An integrated cell atlas of the human lung in health and disease (core) cell type: Alveolar fibroblasts Peribronchial fibroblasts Subpleural fibroblasts expressed genes: CADM3		Explore
4	Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution https://doi.org/10.1016/j.cell.2020.08.013Deposited data# 98,348 cells Dataset 2: Periphery - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution cell type: FB_01 FB_02 FB_03 expressed genes: CADM3 Dataset 3: Fovea - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution cell type: FB_02 expressed genes: CADM3		Explore
5	Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types https://doi.org/10.1073/pnas.2200914119Deposited data# 195,248 cells Dataset 2: Trabecular Meshwork and Corneal Scleral wedge cell type: FibroX K_Fibro Sclera_Fibro TM_Fibro Uveal_Fibro expressed genes: CADM3 Dataset 4: Ciliary Body cell type: Ciliary_Fibro expressed genes: CADM3		Explore
6	Cells of the human intestinal tract mapped across space and time https://doi.org/10.1038/s41586-021-03852-1Deposited data# 428,469 cells Dataset 1: Total - Cells of the human intestinal tract mapped across space and time cell type: reticular cell expressed genes: CADM3		Explore
7	Construction of a human cell landscape at single-cell level https://doi.org/10.1038/s41586-020-2157-4Deposited data# 599,926 cells Dataset 1: Construction of a human cell landscape at single-cell level cell type: Fetal fibroblast Fibroblast expressed genes: CADM3		Explore
8	Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin https://doi.org/10.1016/j.celrep.2023.111994Deposited data# 15,243 cells Dataset 1: UMAP visualization of all 12 datasets cell type: Fibroblasts I Fibroblasts II expressed genes: CADM3		Explore
9	Integrated analysis of multimodal single-cell data (version 2) https://doi.org/10.1016/j.cell.2021.04.048Deposited data# 584,884 cells Dataset 1: Human - Lung v2 (HLCA) cell type: Alveolar fibroblasts Fibromyocytes Peribronchial fibroblasts Subpleural fibroblasts expressed genes: CADM3		Explore
10	Polybacterial intracellular coinfection of epithelial stem cells in periodontitis https://doi.org/10.1101/2023.08.23.554343Deposited data# 105,918 cells Dataset 1: An Integrated Single Cell Meta-atlas of Human Periodontitis cell type: Fibroblast 1 Fibroblast 2 expressed genes: CADM3		Explore
11	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease https://doi.org/10.1016/j.devcel.2020.11.010Deposited data# 85,351 cells Dataset 1: Fetal Human Gut (6-11 PCW) cell type: FOXL1+ fibroblasts FRZB+ fibroblasts WNT4+ fibroblasts expressed genes: CADM3 Dataset 2: Paediatric Human Gut (4-14y) cell type: S1 fibroblasts S2 fibroblasts S4 fibroblasts expressed genes: CADM3		Explore
12	Single-cell reconstruction of the early maternal–fetal interface in humans https://doi.org/10.1038/s41586-018-0698-6Deposited data# 70,325 cells Dataset 1: Pregnant Uterus (All) cell type: fFB1 fFB2 expressed genes: CADM3		Explore
13	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming https://doi.org/10.1038/s42003-020-0922-4Deposited data# 15,457 cells Dataset 1: Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming cell type: Pro-inflammatory Secretory-papilliary Secretory-reticular expressed genes: CADM3		Explore
14	Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration https://doi.org/10.1073/pnas.1914143116Deposited data# 4,335 cells Dataset 1: Retina cell type: Fibroblast expressed genes: CADM3		Explore
15	Spatially resolved multiomics of human cardiac niches https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells Dataset 1: Combined single cell and single nuclei RNA-Seq data - Heart Global cell type: FB1 FB2 FB3 FB4_activated FB5 FB6 expressed genes: CADM3		Explore
16	The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon https://doi.org/10.1016/j.immuni.2023.01.002Deposited data# 720,633 cells Dataset 5: TI stromal cell type: Activated fibroblasts CCL19 ADAMADEC1 Fibroblasts ADAMDEC1 Fibroblasts KCNN3 LY6H Fibroblasts NPY SLITRK6 Fibroblasts SFRP2 SLPI Fibroblasts SMOC2 PTGIS expressed genes: CADM3 Dataset 6: colon stromal cell type: Activated fibroblasts CCL19 ADAMADEC1 Fibroblasts ADAMDEC1 Fibroblasts KCNN3 LY6H Fibroblasts NPY SLITRK6 Fibroblasts SFRP2 SLPI Fibroblasts SMOC2 PTGIS Inflammatory fibroblasts IL11 CHI3L1 expressed genes: CADM3		Explore
17	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells Dataset 3: Lung Parenchyma cell type: Fibroblast expressed genes: CADM3		Explore

scRNA-seq studies - Human