Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

fibroblast

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

20 studies

36 datasets

4,764,280 cells

	Title	Total cells
1	A cell atlas of human thymic development defines T cell repertoire formation https://doi.org/10.1126/science.aay3224Deposited data# 255,901 cells Dataset 1: Figure 1 - A cell atlas of human thymic development defines T cell repertoire formation cell type: fibroblast expressed genes: BCCIP		Explore
2	A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells Dataset 1: All cells cell type: bronchus fibroblast of lung fibroblast of lung pulmonary interstitial fibroblast expressed genes: BCCIP		Explore
3	A molecular cell atlas of the human lung from single cell RNA sequencing https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells Dataset 2: Krasnow Lab Human Lung Cell Atlas, Smart-seq2 cell type: Alveolar Fibroblast Fibromyocyte Lipofibroblast expressed genes: BCCIP		Explore
4	A single-cell and spatially resolved atlas of human breast cancers https://doi.org/10.1038/s41588-021-00911-1Deposited data# 100,064 cells Dataset 1: A single-cell and spatially-resolved atlas of human breast cancers cell type: CAFs MSC iCAF-like s1 CAFs MSC iCAF-like s2 CAFs myCAF like s4 CAFs myCAF like s5 CAFs Transitioning s3 expressed genes: BCCIP		Explore
5	A spatially resolved atlas of the human lung characterizes a gland-associated immune niche https://doi.org/10.1038/s41588-022-01243-4Deposited data# 193,108 cells Dataset 1: All cells and nuclei cell type: Fibro_alveolar Fibro_immune_recruiting Fibro_peribronchial Fibro_perichondrial NAF_endoneurial NAF_perineurial expressed genes: BCCIP		Explore
6	A spatially resolved single cell genomic atlas of the adult human breast https://doi.org/10.1038/s41586-023-06252-9Deposited data# 831,677 cells Dataset 1: scRNA-seq data - all cells cell type: Fibro-major Fibro-matrix Fibro-prematrix Fibro-SFRP4 expressed genes: BCCIP Dataset 2: snRNA-seq data - all cells cell type: Fibroblasts expressed genes: BCCIP		Explore
7	Blood and immune development in human fetal bone marrow and Down syndrome https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells Dataset 1: Fetal Bone Marrow (10x) cell type: arteriolar fibroblast endosteal fibroblast expressed genes: BCCIP		Explore
8	Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution https://doi.org/10.1016/j.cell.2020.08.013Deposited data# 98,348 cells Dataset 2: Periphery - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution cell type: FB_01 FB_02 FB_03 expressed genes: BCCIP Dataset 3: Fovea - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution cell type: FB_02 expressed genes: BCCIP		Explore
9	Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types https://doi.org/10.1073/pnas.2200914119Deposited data# 195,248 cells Dataset 1: Iris cell type: Iris_Fibro expressed genes: BCCIP Dataset 2: Trabecular Meshwork and Corneal Scleral wedge cell type: FibroX K_Fibro Sclera_Fibro TM_Fibro Uveal_Fibro expressed genes: BCCIP Dataset 3: Central Cornea cell type: K_Fibro expressed genes: BCCIP Dataset 4: Ciliary Body cell type: Ciliary_Fibro expressed genes: BCCIP		Explore
10	Cells of the human intestinal tract mapped across space and time https://doi.org/10.1038/s41586-021-03852-1Deposited data# 428,469 cells Dataset 1: Total - Cells of the human intestinal tract mapped across space and time cell type: reticular cell expressed genes: BCCIP		Explore
11	Construction of a human cell landscape at single-cell level https://doi.org/10.1038/s41586-020-2157-4Deposited data# 599,926 cells Dataset 1: Construction of a human cell landscape at single-cell level cell type: Fetal fibroblast Fibroblast expressed genes: BCCIP		Explore
12	Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis https://doi.org/10.1016/j.cell.2019.06.029Deposited data# 34,772 cells Dataset 1: Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis cell type: WNT2B+ Fos-lo 1 WNT5B+ 2 expressed genes: BCCIP		Explore
13	Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells Dataset 1: Single-cell transcriptomic datasets of Renal cell carcinoma patients cell type: fibroblast expressed genes: BCCIP		Explore
14	Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro https://doi.org/10.1038/s41588-021-00972-2Deposited data# 218,979 cells Dataset 1: Non-pregnant Uterus (Endometrium - All) cell type: Fibroblast C7 expressed genes: BCCIP		Explore
15	Polybacterial intracellular coinfection of epithelial stem cells in periodontitis https://doi.org/10.1101/2023.08.23.554343Deposited data# 105,918 cells Dataset 1: An Integrated Single Cell Meta-atlas of Human Periodontitis cell type: Fibroblast 1 Fibroblast 2 expressed genes: BCCIP		Explore
16	Single cell transcriptomic profiling identifies molecular phenotypes of newborn human lung cells https://doi.org/10.3390/genes15030298Deposited data# 5,499 cells Dataset 1: Single cell transcriptomic profiling identifies molecular phenotypes of newborn human lung cells cell type: Matrix_Fibroblast expressed genes: BCCIP		Explore
17	Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors https://doi.org/10.1126/science.aat1699Deposited data# 40,268 cells Dataset 1: mature cell type: Fibroblast expressed genes: BCCIP		Explore
18	Spatially resolved multiomics of human cardiac niches https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells Dataset 1: Combined single cell and single nuclei RNA-Seq data - Heart Global cell type: FB1 FB2 FB3 FB4_activated FB5 FB6 expressed genes: BCCIP		Explore
19	Spatiotemporal immune zonation of the human kidney https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells Dataset 1: Mature kidney dataset: full cell type: Fibroblast expressed genes: BCCIP Dataset 2: Fetal kidney dataset: full cell type: Fibroblast 1 Fibroblast 2 Proliferating fibroblast expressed genes: BCCIP		Explore
20	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells Dataset 3: Lung Parenchyma cell type: Fibroblast expressed genes: BCCIP		Explore

Published data collections