Studies | OmnibusX

Filter by metadata

cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

endothelial cell

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

14 studies

27 datasets

2,173,526 cells

	Title	Total cells
1	A cell atlas of human thymic development defines T cell repertoire formation https://doi.org/10.1126/science.aay3224Deposited data# 255,901 cells Dataset 1: Figure 1 - A cell atlas of human thymic development defines T cell repertoire formation cell type: endothelial cell expressed genes: F2RL3		Explore
2	Blood and immune development in human fetal bone marrow and Down syndrome https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells Dataset 1: Fetal Bone Marrow (10x) cell type: immature EC proliferating EC expressed genes: F2RL3		Explore
3	Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types https://doi.org/10.1073/pnas.2200914119Deposited data# 195,248 cells Dataset 2: Trabecular Meshwork and Corneal Scleral wedge cell type: K_Endo Schlemm_Endo expressed genes: F2RL3		Explore
4	Dysregulated lung stroma drives emphysema exacerbation by potentiating resident lymphocytes to suppress an epithelial stem cell reservoir https://doi.org/10.1016/j.immuni.2023.01.032Deposited data# 57,747 cells Dataset 2: non-immune cells cell type: Endothelial expressed genes: F2RL3		Explore
5	Generation of complex human induced pluripotent stem cell-derived bone marrow organoids https://doi.org/10.1038/s41592-024-02172-2Deposited data# 31,040 cells Dataset 1: Bone marrow organoids (BMO) cell type: endothelial rest expressed genes: F2RL3		Explore
6	Identification of distinct tumor cell populations and key genetic mechanisms through single cell sequencing in hepatoblastoma https://doi.org/10.1038/s42003-021-02562-8Deposited data# 67,110 cells Dataset 1: Modeling Hepatoblastoma: Identification of Distinct Tumor Cell Populations and Key Genetic Mechanisms through Single Cell Sequencing cell type: endothelial cell expressed genes: F2RL3		Explore
7	Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells Dataset 1: Single-cell transcriptomic datasets of Renal cell carcinoma patients cell type: endothelial cell expressed genes: F2RL3		Explore
8	Single-Cell Analysis of Crohn’s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy https://doi.org/10.1016/j.cell.2019.08.008Deposited data# 32,458 cells Dataset 1: Ileum cell type: ACKR1+ endothelium CD36+ endothelium expressed genes: F2RL3		Explore
9	Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response https://doi.org/10.1073/pnas.2103240118Deposited data# 29,129 cells Dataset 1: ccRCC - Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response cell type: Endo_ACKR1 Endo_PLVAP expressed genes: F2RL3 Dataset 2: normal - Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response cell type: AEA-DVR AVR UC expressed genes: F2RL3		Explore
10	Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes https://doi.org/10.1038/s42255-022-00531-xDeposited data# 69,645 cells Dataset 1: Multiomics single-cell analysis of human pancreatic islets reveals novel cellular states in health and type 1 diabetes cell type: endothelial expressed genes: F2RL3		Explore
11	Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors https://doi.org/10.1126/science.aat1699Deposited data# 40,268 cells Dataset 1: mature cell type: Ascending vasa recta endothelium Descending vasa recta endothelium expressed genes: F2RL3		Explore
12	Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver https://doi.org/10.1016/j.jhep.2023.12.023Deposited data# 195,417 cells Dataset 2: All cells types from scRNA-seq of human primary sclerosing cholangitis patients and healthy controls cell type: cvEndo expressed genes: F2RL3		Explore
13	Spatially resolved multiomics of human cardiac niches https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells Dataset 1: Combined single cell and single nuclei RNA-Seq data - Heart Global cell type: EC10_CMC-like EC4_immune EC8_ln EC9_FB-like expressed genes: F2RL3		Explore
14	Spatiotemporal immune zonation of the human kidney https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells Dataset 1: Mature kidney dataset: full cell type: Ascending vasa recta endothelium Descending vasa recta endothelium expressed genes: F2RL3		Explore

Published data collections