Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

endothelial cell

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

19 studies

32 datasets

3,359,669 cells

	Title	Total cells
1	A molecular single-cell lung atlas of lethal COVID-19 https://doi.org/10.1038/s41586-021-03569-1Deposited data# 116,313 cells Dataset 1: A molecular single-cell lung atlas of lethal COVID-19 cell type: Endothelial cells (general) Endothelial cells (other) Inflamed endothelial cells expressed genes: CCDC85A		Explore
2	A single-cell comparison of adult and fetal human epicardium defines the age-associated changes in epicardial activity https://doi.org/10.1038/s44161-022-00183-wDeposited data# 60,668 cells Dataset 1: Integrated adult and foetal hearts cell type: Endothelial_Other Immature_Endothelium expressed genes: CCDC85A		Explore
3	Abdominal White Adipose Tissue https://cellxgene.cziscience.com/collections/6b701826-37bb-4356-9792-ff41fc4c3161Deposited data# 72,335 cells Dataset 1: 22 integrated samples cell type: Endothelial Cells expressed genes: CCDC85A		Explore
4	Altered human oligodendrocyte heterogeneity in multiple sclerosis https://doi.org/10.1038/s41586-019-0903-2Deposited data# 17,799 cells Dataset 1: Oligodendrocytes in MS cell type: Endothelial_cells1 Endothelial_cells2 expressed genes: CCDC85A		Explore
5	Comparative transcriptomics reveals human-specific cortical features https://doi.org/10.1126/science.ade9516Deposited data# 156,285 cells Dataset 1: Human: Great apes study cell type: Endo expressed genes: CCDC85A		Explore
6	Cryptic exon detection and transcriptomic changes revealed in single-nuclei RNA sequencing of C9ORF72 patients spanning the ALS-FTD spectrum https://doi.org/10.1007/s00401-023-02599-5Deposited data# 461,290 cells Dataset 1: Frontal cortex samples from C9-ALS, C9-ALS/FTD and age matched control brains cell type: Endothelial expressed genes: CCDC85A Dataset 3: Frontal cortex samples from C9-FTD and age matched control brains cell type: Endothelial expressed genes: CCDC85A		Explore
7	Dysregulation of brain and choroid plexus cell types in severe COVID-19 https://doi.org/10.1038/s41586-021-03710-0Deposited data# 65,309 cells Dataset 1: A total of 38,217 droplet-based single-nucleus transcriptomes profiled across 14 cell types in the frontal cortex cell type: Endothelial expressed genes: CCDC85A		Explore
8	Early infection response of the first trimester human placenta at single-cell scale https://doi.org/10.1101/2023.01.02.522155Deposited data# 158,978 cells Dataset 1: Placenta Infection cell type: Endo_f expressed genes: CCDC85A		Explore
9	Generation of complex human induced pluripotent stem cell-derived bone marrow organoids https://doi.org/10.1038/s41592-024-02172-2Deposited data# 31,040 cells Dataset 1: Bone marrow organoids (BMO) cell type: endothelial rest expressed genes: CCDC85A		Explore
10	Molecular characterization of selectively vulnerable neurons in Alzheimer's Disease https://doi.org/10.1038/s41593-020-00764-7Deposited data# 106,136 cells Dataset 1: Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Superior frontal gyrus cell type: Exc expressed genes: CCDC85A Dataset 2: Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Entorhinal Cortex cell type: Endo expressed genes: CCDC85A		Explore
11	Multi-omic profiling of the developing human cerebral cortex at the single cell level https://doi.org/10.1126/sciadv.adg3754Deposited data# 45,549 cells Dataset 1: 10x scRNA-seq from human cortex cell type: Endothelial expressed genes: CCDC85A		Explore
12	Multimodal single cell sequencing implicates chromatin accessibility and genetic background in diabetic kidney disease progression https://doi.org/10.1038/s41467-022-32972-zDeposited data# 39,176 cells Dataset 1: Human kidney cortex snRNA-seq data from donors with and without diabetic kidney disease cell type: ENDO expressed genes: CCDC85A		Explore
13	Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies https://doi.org/10.1126/science.abo1984Deposited data# 826,733 cells Dataset 5: DCM/ACM heart cell atlas: Endothelial cells cell type: EC1.0 EC2.0 EC5.0 EC6.0 EC7.0 EC8.0 expressed genes: CCDC85A		Explore
14	Resolving cellular and molecular diversity along the hippocampal anterior-to-posterior axis in humans https://doi.org/10.1016/j.neuron.2021.05.003Deposited data# 129,905 cells Dataset 1: snRNA-seq of human anterior and posterior hippocampus cell type: Endo expressed genes: CCDC85A		Explore
15	SARS‐CoV‐2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells https://doi.org/10.15252/embj.20105114Deposited data# 57,229 cells Dataset 1: Lung cell type: endothelial cell expressed genes: CCDC85A		Explore
16	Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney https://doi.org/10.1038/s41467-021-22368-wDeposited data# 19,985 cells Dataset 1: Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney - RNAseq cell type: ENDO expressed genes: CCDC85A		Explore
17	Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder https://doi.org/10.1038/s41467-024-45165-7Deposited data# 98,848 cells Dataset 1: Transcriptional responses of the human dorsal striatum in opioid use disorder implicates cell type-specifc programs cell type: Endothelial expressed genes: CCDC85A		Explore
18	Spatial multi-omic map of human myocardial infarction https://doi.org/10.1038/s41586-022-05060-xDeposited data# 191,795 cells Dataset 1: All-snRNA-Spatial multi-omic map of human myocardial infarction cell type: Endothelial expressed genes: CCDC85A		Explore
19	Spatially resolved multiomics of human cardiac niches https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells Dataset 1: Combined single cell and single nuclei RNA-Seq data - Heart Global cell type: EC10_CMC-like EC4_immune EC8_ln EC9_FB-like expressed genes: CCDC85A		Explore

Published data collections