Published data collections

A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells

A molecular cell atlas of the human lung from single cell RNA sequencing

https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells

A molecular single-cell lung atlas of lethal COVID-19

https://doi.org/10.1038/s41586-021-03569-1Deposited data# 116,313 cells

A spatially resolved atlas of the human lung characterizes a gland-associated immune niche

https://doi.org/10.1038/s41588-022-01243-4Deposited data# 193,108 cells

Blood and immune development in human fetal bone marrow and Down syndrome

https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells

Cross-tissue immune cell analysis reveals tissue-specific features in humans

https://doi.org/10.1126/science.abl5197Deposited data# 329,762 cells

Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19

https://doi.org/10.1126/sciimmunol.abd1554Deposited data# 59,572 cells

Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19

https://doi.org/10.1016/j.cell.2021.07.023Deposited data# 32,588 cells

Local and systemic responses to SARS-CoV-2 infection in children and adults

https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells

Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19

https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells

Prolonged cytopenia following CD19 CAR T cell therapy is linked with bone marrow infiltration of clonally expanded IFNγ-expressing CD8 T cells

https://doi.org/10.1016/j.xcrm.2023.101158Deposited data# 92,676 cells

Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer

https://doi.org/10.1016/j.ccell.2021.09.008Deposited data# 147,137 cells

Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease

https://doi.org/10.1016/j.devcel.2020.11.010Deposited data# 85,351 cells

Single-cell multi-omics analysis of the immune response in COVID-19

https://doi.org/10.1038/s41591-021-01329-2Deposited data# 647,366 cells

Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes

https://doi.org/10.7554/eLife.62522Deposited data# 46,500 cells

Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors

https://doi.org/10.1126/science.aat1699Deposited data# 40,268 cells

Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function

https://doi.org/10.1126/science.abl4290Deposited data# 209,126 cells

The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon

https://doi.org/10.1016/j.immuni.2023.01.002Deposited data# 720,633 cells

mRNA COVID-19 vaccine elicits potent adaptive immune response without the acute inflammation of SARS-CoV-2 infection

https://doi.org/10.1016/j.isci.2023.108572Deposited data# 195,632 cells

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells