Published data collections

Filter by metadata
cell type (236)
condition (31)
development stage (6)
technology (12)
tissue (35)
dendritic cell
B cell
CD16-negative, CD56-bright natural killer cell, human
CD16-positive, CD56-dim natural killer cell, human
CD4-positive helper T cell
CD4-positive, alpha-beta T cell
CD4-positive, alpha-beta cytotoxic T cell
CD4-positive, alpha-beta memory T cell
CD8-positive, alpha-beta T cell
CD8-positive, alpha-beta memory T cell
GABAergic amacrine cell
GABAergic interneuron
GABAergic neuron
H1 horizontal cell
H2 horizontal cell
Hofbauer cell
IgA plasma cell
IgG plasma cell
IgM plasma cell
Kupffer cell
Langerhans cell
M cell of gut
Merkel cell
Mueller cell
OFF-bipolar cell
ON-bipolar cell
Purkinje cell
Schwann cell
T cell
T follicular helper cell
T-helper 1 cell
T-helper 17 cell
T-helper 2 cell
abnormal cell
acinar cell
adipocyte
adventitial cell
airway submucosal gland
alveolar macrophage
amacrine cell
astrocyte
basal cell
basophil
brush cell
capillary endothelial cell
cardiac muscle cell
central memory CD4-positive, alpha-beta T cell
central memory CD8-positive, alpha-beta T cell
chandelier cell
cholangiocyte
chondrocyte
ciliated cell
classical monocyte
club cell
colon epithelial cell
common lymphoid progenitor
common myeloid progenitor
cone retinal bipolar cell
connective tissue cell
conventional dendritic cell
cortical interneuron
deuterosomal cell
differentiation-committed oligodendrocyte precursor
dopaminergic neuron
double negative thymocyte
double-positive, alpha-beta thymocyte
duct epithelial cell
early lymphoid progenitor
effector CD4-positive, alpha-beta T cell
effector CD8-positive, alpha-beta T cell
effector memory CD4-positive, alpha-beta T cell
effector memory CD4-positive, alpha-beta T cell, terminally differentiated
effector memory CD8-positive, alpha-beta T cell
effector memory CD8-positive, alpha-beta T cell, terminally differentiated
endocardial cell
endocrine cell
endothelial cell
endothelial cell of artery
endothelial cell of lymphatic vessel
endothelial cell of sinusoid
endothelial cell of vascular tree
endothelial stalk cell
enteric neuron
enterochromaffin-like cell
enterocyte
enteroendocrine cell
eosinophil
ependymal cell
epithelial cell
epithelial cell of proximal tubule
epithelial cell of thymus
erythroblast
erythrocyte
erythroid lineage cell
exhausted T cell
extravillous trophoblast
fibroblast
follicular B cell
follicular dendritic cell
foveolar cell of stomach
gamma-delta T cell
germinal center B cell
glandular epithelial cell
glial cell
glomerular endothelial cell
glutamatergic neuron
glycinergic amacrine cell
goblet cell
granule cell
granulocyte
granulocyte monocyte progenitor cell
granulosa cell
group 2 innate lymphoid cell
group 3 innate lymphoid cell
hematopoietic precursor cell
hematopoietic stem cell
hepatic stellate cell
hepatocyte
hillock cell
immature B cell
inflammatory macrophage
inhibitory interneuron
innate lymphoid cell
intermediate monocyte
interneuron
interstitial cell of Cajal
intestinal crypt stem cell
intraepithelial lymphocyte
ionocyte
keratinocyte
kidney connecting tubule epithelial cell
kidney distal convoluted tubule epithelial cell
kidney failure
kidney loop of Henle epithelial cell
leukocyte
luminal adaptive secretory precursor cell of mammary gland
luminal cell of prostate epithelium
luminal hormone-sensing cell of mammary gland
lymphangioblast
lymphocyte
macroglial cell
macrophage
mast cell
mature NK T cell
medium spiny neuron
megakaryocyte
megakaryocyte-erythroid progenitor cell
melanocyte
memory B cell
mesangial cell
mesothelial cell
microglial cell
monocyte
monocyte-derived dendritic cell
mononuclear phagocyte
motor neuron
mucosal invariant T cell
mucus secreting cell
mural cell
muscle cell
myeloid cell
myoepithelial cell
myofibroblast cell
naive B cell
naive thymus-derived CD4-positive, alpha-beta T cell
naive thymus-derived CD8-positive, alpha-beta T cell
natural killer cell
neural crest cell
neural progenitor cell
neuroblast (sensu Vertebrata)
neuroendocrine cell
neuron
neutrophil
non-classical monocyte
oligodendrocyte
oligodendrocyte precursor cell
osteoclast
pancreatic A cell
pancreatic D cell
pancreatic PP cell
pancreatic ductal cell
pancreatic epsilon cell
pancreatic stellate cell
paneth cell
papillary tips cell
parietal epithelial cell
peptic cell
pericyte
placental villous trophoblast
plasma cell
plasmablast
plasmacytoid dendritic cell
platelet
pneumocyte
podocyte
pre-conventional dendritic cell
preadipocyte
precursor B cell
precursor cell
pro-B cell
pro-T cell
progenitor cell
progenitor cell of mammary luminal epithelium
pyramidal neuron
radial glial cell
regulatory T cell
renal alpha-intercalated cell
renal beta-intercalated cell
renal intercalated cell
renal principal cell
respiratory goblet cell
respiratory suprabasal cell
retina horizontal cell
retinal bipolar neuron
retinal cone cell
retinal ganglion cell
retinal pigment epithelial cell
retinal rod cell
rod bipolar cell
secretory cell
serous secreting cell
smooth muscle cell
squamous epithelial cell
stratified epithelial cell
syncytiotrophoblast
syncytiotrophoblast cell
thymocyte
tip cell
tissue-resident macrophage
transit amplifying cell
type B pancreatic cell
type I pneumocyte
type II pneumocyte
unipolar brush cell
urothelial cell
vein endothelial cell
Filter by expression
ARSA
14 studies
Studies54 datasets
4,437,963 cells
Title
Total cells
1

A cell atlas of human thymic development defines T cell repertoire formation

https://doi.org/10.1126/science.aay3224Deposited data# 255,901 cells

Dataset 1: Figure 1 - A cell atlas of human thymic development defines T cell repertoire formation

cell type:
dendritic cell
expressed genes:
ARSA
Explore
2

A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells

Dataset 1: All cells

cell type:
dendritic cell
dendritic cell, human
expressed genes:
ARSA
Explore
3

A molecular cell atlas of the human lung from single cell RNA sequencing

https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells

Dataset 1: Krasnow Lab Human Lung Cell Atlas, 10X

cell type:
EREG+ Dendritic
IGSF21+ Dendritic
TREM2+ Dendritic
expressed genes:
ARSA

Dataset 2: Krasnow Lab Human Lung Cell Atlas, Smart-seq2

cell type:
Dendritic
IGSF21+ Dendritic
expressed genes:
ARSA
Explore
4

A single-cell and spatially resolved atlas of human breast cancers

https://doi.org/10.1038/s41588-021-00911-1Deposited data# 100,064 cells

Dataset 1: A single-cell and spatially-resolved atlas of human breast cancers

cell type:
Myeloid_c0_DC_LAMP3
expressed genes:
ARSA
Explore
5

An integrated cell atlas of the lung in health and disease

https://doi.org/10.1038/s41591-023-02327-2Deposited data# 584,944 cells

Dataset 1: An integrated cell atlas of the human lung in health and disease (core)

cell type:
Migratory DCs
expressed genes:
ARSA
Explore
6

Blood and immune development in human fetal bone marrow and Down syndrome

https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells

Dataset 1: Fetal Bone Marrow (10x)

cell type:
DC1
DC2
DC3
tDC
expressed genes:
ARSA

Dataset 3: Fetal Bone Marrow (10x) - Down Syndrome

cell type:
DC1
DC2
DC3
expressed genes:
ARSA

Dataset 4: Human Fetal Bone Marrow (CITE-seq)

cell type:
DC1
DC2
DC3
expressed genes:
ARSA
Explore
7

Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19

https://doi.org/10.1126/sciimmunol.abd1554Deposited data# 59,572 cells

Dataset 1: Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19

cell type:
DC
expressed genes:
ARSA
Explore
8

Integrated analysis of multimodal single-cell data (version 2)

https://doi.org/10.1016/j.cell.2021.04.048Deposited data# 584,884 cells

Dataset 1: Human - Lung v2 (HLCA)

cell type:
Migratory DCs
expressed genes:
ARSA
Explore
9

Local and systemic responses to SARS-CoV-2 infection in children and adults

https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells

Dataset 1: PBMC

cell type:
AS-DC
expressed genes:
ARSA
Explore
10

Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19

https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells

Dataset 1: 49 years old male - Fresh PBMCs (2 days post-intubation)

cell type:
dendritic
expressed genes:
ARSA

Dataset 3: 49 years old male - Fresh PBMCs (3 days post-intubation)

cell type:
dendritic
expressed genes:
ARSA

Dataset 4: 66 years old female - Fresh PBMCs (2 days post-intubation)

cell type:
dendritic
expressed genes:
ARSA

Dataset 7: 66 years old female - Fresh PBMCs (4 days post-intubation)

cell type:
dendritic
expressed genes:
ARSA

Dataset 8: 74 years old female - Fresh PBMCs (3 days post-intubation)

cell type:
dendritic
expressed genes:
ARSA

Dataset 9: 74 years old female - Fresh PBMCs (4 days post-intubation)

cell type:
dendritic
expressed genes:
ARSA

Dataset 10: 74 years old female - Fresh PBMCs (7 days post-intubation)

cell type:
dendritic
expressed genes:
ARSA

Dataset 11: 66 years old female - Fresh PBMCs (3 days post-intubation)

cell type:
dendritic
expressed genes:
ARSA

Dataset 12: 74 years old female - Fresh PBMCs (8 days post-intubation)

cell type:
dendritic
expressed genes:
ARSA

Dataset 14: 49 years old male - Fresh PBMCs (1 day post-intubation)

cell type:
dendritic
expressed genes:
ARSA

Dataset 18: 66 years old female - Fresh PBMCs (7 days post-intubation)

cell type:
dendritic
expressed genes:
ARSA
Explore
11

Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease

https://doi.org/10.1016/j.devcel.2020.11.010Deposited data# 85,351 cells

Dataset 2: Paediatric Human Gut (4-14y)

cell type:
activated DC
expressed genes:
ARSA
Explore
12

Single-cell multi-omics analysis of the immune response in COVID-19

https://doi.org/10.1038/s41591-021-01329-2Deposited data# 647,366 cells

Dataset 1: Single-cell multi-omics analysis of the immune response in COVID-19

cell type:
ASDC
DC_prolif
DC1
DC2
DC3
expressed genes:
ARSA
Explore
13

The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon

https://doi.org/10.1016/j.immuni.2023.01.002Deposited data# 720,633 cells

Dataset 1: TI immune

cell type:
Mature DCs
expressed genes:
ARSA

Dataset 3: colon immune

cell type:
Mature DCs
expressed genes:
ARSA
Explore
14

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells

Dataset 3: Lung Parenchyma

cell type:
DC_activated
expressed genes:
ARSA
Explore