Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

20 studies

36 datasets

3,170,367 cells

	Title	Total cells
1	Altered human oligodendrocyte heterogeneity in multiple sclerosis https://doi.org/10.1038/s41586-019-0903-2Deposited data# 17,799 cells Dataset 1: Oligodendrocytes in MS tissue: brain brain white matter expressed genes: UTRN		Explore
2	Brain matters: Unveiling the Distinct Contributions of Region, Age, and Sex to Glia diversity and CNS Function https://doi.org/10.1186/s40478-023-01568-zDeposited data# 45,528 cells Dataset 1: white matter - all cells tissue: Brodmann (1909) area 4 cervical spinal cord white matter white matter of cerebellum expressed genes: UTRN		Explore
3	Cell type-specific effects of age and sex on human cortical neurons https://doi.org/10.1101/2023.11.11.566717Deposited data# 37,121 cells Dataset 1: snmCT-seq of human dorsolateral prefrontal cortex (Brodmann area 46) tissue: Brodmann (1909) area 46 expressed genes: UTRN		Explore
4	Cellular development and evolution of the mammalian cerebellum https://doi.org/10.1038/s41586-023-06884-xDeposited data# 180,956 cells Dataset 1: snRNA-seq data for human cerebella from 9-12 developmental stages tissue: cerebellar cortex cerebellum cerebellum vermis lobule dentate nucleus hemisphere part of cerebellar posterior lobe expressed genes: UTRN		Explore
5	Comparative transcriptomics reveals human-specific cortical features https://doi.org/10.1126/science.ade9516Deposited data# 156,285 cells Dataset 1: Human: Great apes study tissue: middle temporal gyrus expressed genes: UTRN		Explore
6	Cryptic exon detection and transcriptomic changes revealed in single-nuclei RNA sequencing of C9ORF72 patients spanning the ALS-FTD spectrum https://doi.org/10.1007/s00401-023-02599-5Deposited data# 461,290 cells Dataset 1: Frontal cortex samples from C9-ALS, C9-ALS/FTD and age matched control brains tissue: frontal cortex expressed genes: UTRN Dataset 2: Occipital cortex samples from C9-ALS, C9-ALS/FTD and age matched control brains tissue: occipital cortex expressed genes: UTRN Dataset 3: Frontal cortex samples from C9-FTD and age matched control brains tissue: frontal cortex expressed genes: UTRN Dataset 4: Occipital cortex samples from C9-FTD and age matched control brains tissue: occipital cortex expressed genes: UTRN		Explore
7	Dysregulation of brain and choroid plexus cell types in severe COVID-19 https://doi.org/10.1038/s41586-021-03710-0Deposited data# 65,309 cells Dataset 1: A total of 38,217 droplet-based single-nucleus transcriptomes profiled across 14 cell types in the frontal cortex tissue: medial orbital frontal cortex expressed genes: UTRN Dataset 2: A total of 27,092 droplet-based single-nucleus transcriptomes profiled across 11 cell types in the choroid plexus tissue: choroid plexus expressed genes: UTRN		Explore
8	Intratumoral heterogeneity in recurrent pediatric pilocytic astrocytomas https://explore.data.humancellatlas.org/projects/575c0ad9-c78e-469b-9fdf-9a68dd881137Deposited data# 35,637 cells Dataset 1: Intratumoral heterogeneity in recurrent pediatric pilocytic astrocytomas tissue: cerebellum expressed genes: UTRN		Explore
9	Molecular characterization of selectively vulnerable neurons in Alzheimer's Disease https://doi.org/10.1038/s41593-020-00764-7Deposited data# 106,136 cells Dataset 1: Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Superior frontal gyrus tissue: superior frontal gyrus expressed genes: UTRN Dataset 2: Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Entorhinal Cortex tissue: entorhinal cortex expressed genes: UTRN		Explore
10	Molecular signatures underlying neurofibrillary tangle susceptibility in Alzheimer’s disease https://doi.org/10.1016/j.neuron.2022.06.021Deposited data# 119,326 cells Dataset 2: Single-soma transcriptomics of tangle-bearing neurons in Alzheimer’s disease - Inhibitory tissue: prefrontal cortex expressed genes: UTRN		Explore
11	Multi-omic profiling of the developing human cerebral cortex at the single cell level https://doi.org/10.1126/sciadv.adg3754Deposited data# 45,549 cells Dataset 1: 10x scRNA-seq from human cortex tissue: cortical plate dorsolateral prefrontal cortex expressed genes: UTRN		Explore
12	Protracted neuronal recruitment in the temporal lobes of young children https://doi.org/10.1038/s41586-023-06981-xDeposited data# 153,005 cells Dataset 1: Subpallial germinal zones and the developing human entorhinal cortex tissue: entorhinal cortex ganglionic eminence expressed genes: UTRN Dataset 2: Interneuron maturation in the human entorhinal cortex tissue: entorhinal cortex ganglionic eminence expressed genes: UTRN Dataset 3: EC Stream Region at 14 days of age tissue: entorhinal cortex expressed genes: UTRN		Explore
13	Resolving cellular and molecular diversity along the hippocampal anterior-to-posterior axis in humans https://doi.org/10.1016/j.neuron.2021.05.003Deposited data# 129,905 cells Dataset 1: snRNA-seq of human anterior and posterior hippocampus tissue: hippocampal formation expressed genes: UTRN		Explore
14	Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer https://doi.org/10.1016/j.ccell.2021.09.008Deposited data# 147,137 cells Dataset 1: Combined samples tissue: brain expressed genes: UTRN		Explore
15	Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer’s disease https://doi.org/10.1038/s41467-020-19737-2Deposited data# 16,245 cells Dataset 1: Olah et al (2020) Single-cell Human Microglia tissue: dorsolateral prefrontal cortex temporal cortex expressed genes: UTRN		Explore
16	Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder https://doi.org/10.1038/s41467-024-45165-7Deposited data# 98,848 cells Dataset 1: Transcriptional responses of the human dorsal striatum in opioid use disorder implicates cell type-specifc programs tissue: caudate nucleus putamen expressed genes: UTRN		Explore
17	Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma https://doi.org/10.1016/j.celrep.2017.10.030Deposited data# 3,589 cells Dataset 1: Infiltrating Neoplastic Cells Human Glioblastoma tissue: cerebral cortex expressed genes: UTRN		Explore
18	Single-cell analysis of prenatal and postnatal human cortical development https://doi.org/10.1126/science.adf0834Deposited data# 709,372 cells Dataset 1: Single-cell analysis of prenatal and postnatal human cortical development tissue: caudal ganglionic eminence cerebral cortex cingulate cortex frontal cortex ganglionic eminence insular cortex lateral ganglionic eminence medial ganglionic eminence primary motor cortex temporal cortex expressed genes: UTRN		Explore
19	Single-cell genomic profiling of human dopamine neurons identifies a population that selectively degenerates in Parkinson’s disease https://doi.org/10.1038/s41593-022-01061-1Deposited data# 572,156 cells Dataset 2: Human Nurr-Negative Nuclei 10x scRNA-seq tissue: substantia nigra pars compacta expressed genes: UTRN Dataset 3: Human Non-DA Neurons 10x scRNA-seq tissue: substantia nigra pars compacta expressed genes: UTRN Dataset 4: Human Nurr-Positive Nuclei 10x scRNA-seq tissue: substantia nigra pars compacta expressed genes: UTRN Dataset 5: Human Astrocytes 10x scRNA-seq tissue: substantia nigra pars compacta expressed genes: UTRN Dataset 6: Human Human Microglia 10x scRNA-seq tissue: substantia nigra pars compacta expressed genes: UTRN Dataset 7: Human DA Neurons 10x scRNA-seq tissue: substantia nigra pars compacta expressed genes: UTRN Dataset 8: Human Endothelial cells 10x scRNA-seq tissue: substantia nigra pars compacta expressed genes: UTRN		Explore
20	Spatial and cell type transcriptional landscape of human cerebellar development https://doi.org/10.1038/s41593-021-00872-yDeposited data# 69,174 cells Dataset 1: Cerebellum tissue: cerebellum expressed genes: UTRN		Explore

Published data collections