Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

astrocyte

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

14 studies

23 datasets

1,959,832 cells

	Title	Total cells
1	Brain matters: Unveiling the Distinct Contributions of Region, Age, and Sex to Glia diversity and CNS Function https://doi.org/10.1186/s40478-023-01568-zDeposited data# 45,528 cells Dataset 1: white matter - all cells cell type: AS_1 AS_10 AS_11 AS_12 AS_2 AS_3 AS_4 AS_5 AS_6 AS_7 AS_8 AS_9 expressed genes: CRYM		Explore
2	Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution https://doi.org/10.1016/j.cell.2020.08.013Deposited data# 98,348 cells Dataset 1: Organoid - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution cell type: Ast expressed genes: CRYM Dataset 2: Periphery - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution cell type: Ast expressed genes: CRYM Dataset 3: Fovea - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution cell type: Ast expressed genes: CRYM		Explore
3	Cell type-specific effects of age and sex on human cortical neurons https://doi.org/10.1101/2023.11.11.566717Deposited data# 37,121 cells Dataset 1: snmCT-seq of human dorsolateral prefrontal cortex (Brodmann area 46) cell type: Glia_Astro expressed genes: CRYM		Explore
4	Cellular development and evolution of the mammalian cerebellum https://doi.org/10.1038/s41586-023-06884-xDeposited data# 180,956 cells Dataset 1: snRNA-seq data for human cerebella from 9-12 developmental stages cell type: astroglia expressed genes: CRYM		Explore
5	Comparative transcriptomics reveals human-specific cortical features https://doi.org/10.1126/science.ade9516Deposited data# 156,285 cells Dataset 1: Human: Great apes study cell type: Astro expressed genes: CRYM		Explore
6	Cryptic exon detection and transcriptomic changes revealed in single-nuclei RNA sequencing of C9ORF72 patients spanning the ALS-FTD spectrum https://doi.org/10.1007/s00401-023-02599-5Deposited data# 461,290 cells Dataset 1: Frontal cortex samples from C9-ALS, C9-ALS/FTD and age matched control brains cell type: Astrocytes expressed genes: CRYM		Explore
7	Early role for a Na+,K+-ATPase (ATP1A3) in brain development https://doi.org/10.1073/pnas.2023333118Deposited data# 170,525 cells Dataset 2: Infant human neocortex cells cell type: glia1_astro_AQP4 expressed genes: CRYM		Explore
8	Human photoreceptor cells from different macular subregions have distinct transcriptional profiles https://doi.org/10.1093/hmg/ddab140Deposited data# 34,323 cells Dataset 1: scRNA-seq of foveal and parafoveal retina cell type: astrocyte expressed genes: CRYM		Explore
9	Integrated multi-omics single cell atlas of the human retina https://doi.org/10.1101/2023.11.07.566105Deposited data# 265,767 cells Dataset 1: scRNA-seq of human retina - all cells cell type: Astrocyte expressed genes: CRYM		Explore
10	Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration https://doi.org/10.1016/j.celrep.2019.12.082Deposited data# 100,055 cells Dataset 1: All cell types of human eye cell type: astrocyte expressed genes: CRYM		Explore
11	Molecular characterization of selectively vulnerable neurons in Alzheimer's Disease https://doi.org/10.1038/s41593-020-00764-7Deposited data# 106,136 cells Dataset 1: Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Superior frontal gyrus cell type: Astro Endo expressed genes: CRYM Dataset 2: Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Entorhinal Cortex cell type: Astro expressed genes: CRYM		Explore
12	Protracted neuronal recruitment in the temporal lobes of young children https://doi.org/10.1038/s41586-023-06981-xDeposited data# 153,005 cells Dataset 1: Subpallial germinal zones and the developing human entorhinal cortex cell type: Astrocytes expressed genes: CRYM		Explore
13	Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder https://doi.org/10.1038/s41467-024-45165-7Deposited data# 98,848 cells Dataset 1: Transcriptional responses of the human dorsal striatum in opioid use disorder implicates cell type-specifc programs cell type: Astrocytes expressed genes: CRYM		Explore
14	Single-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseases https://doi.org/10.1016/j.xgen.2022.100164Deposited data# 51,645 cells Dataset 1: Joint scRNA-seq and scATAC-seq atlas of the adult human retina cell type: Astrocyte expressed genes: CRYM		Explore

Published data collections