Studies | OmnibusX

Filter by metadata

cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

CD4-positive, alpha-beta memory T cell

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

13 studies

22 datasets

3,817,493 cells

	Title	Total cells
1	A cell atlas of human thymic development defines T cell repertoire formation https://doi.org/10.1126/science.aay3224Deposited data# 255,901 cells Dataset 1: Figure 1 - A cell atlas of human thymic development defines T cell repertoire formation cell type: CD4-positive, alpha-beta memory T cell expressed genes: CD3E		Explore
2	A single-cell atlas of CD19 chimeric antigen receptor T cells https://doi.org/10.1016/j.ccell.2023.08.015Deposited data# 349,340 cells Dataset 2: Single cell atlas of CD19 CAR T-cells (CD4+) cell type: C01:Memory C03:Memory expressed genes: CD3E		Explore
3	A spatially resolved atlas of the human lung characterizes a gland-associated immune niche https://doi.org/10.1038/s41588-022-01243-4Deposited data# 193,108 cells Dataset 1: All cells and nuclei cell type: CD4_TRM expressed genes: CD3E		Explore
4	A spatially resolved single cell genomic atlas of the adult human breast https://doi.org/10.1038/s41586-023-06252-9Deposited data# 831,677 cells Dataset 1: scRNA-seq data - all cells cell type: CD4-activated expressed genes: CD3E		Explore
5	Characteristics of anti-CD19 CAR T cell infusion products associated with efficacy and toxicity in patients with large B cell lymphomas https://doi.org/10.1038/s41591-020-1061-7Deposited data# 133,405 cells Dataset 1: Single cell RNA sequencing of CD19 CAR T-cell infusion products cell type: Memory CD4 expressed genes: CD3E		Explore
6	Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis https://doi.org/10.1016/j.cell.2019.06.029Deposited data# 34,772 cells Dataset 1: Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis cell type: CD4+ Memory expressed genes: CD3E		Explore
7	Local and systemic responses to SARS-CoV-2 infection in children and adults https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells Dataset 2: Airway cell type: T CD4 mem expressed genes: CD3E		Explore
8	Multiomic Profiling of Human Clonal Hematopoiesis Reveals Genotype and Cell-Specific Inflammatory Pathway Activation https://doi.org/10.1182/bloodadvances.2023011445Deposited data# 66,985 cells Dataset 1: Single Cell Sequencing of Human PBMCs in Clonal Hematopoeisis of Indeterminant Potential cell type: Memory CD4+ T cells expressed genes: CD3E		Explore
9	Single cell profiling of COVID-19 patients: an international data resource from multiple tissues https://doi.org/10.1101/2020.11.20.20227355Deposited data# 97,499 cells Dataset 1: Autoimmunity PBMCs cell type: CD4 memory T expressed genes: CD3E		Explore
10	Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses https://doi.org/10.1038/s41467-022-29450-xDeposited data# 113,289 cells Dataset 1: Activated PBMCs - Expanded cohort CITE-seq cell type: T4_memory expressed genes: CD3E Dataset 2: Activated PBMCs - Twins scRNA-seq cell type: T4_memory expressed genes: CD3E		Explore
11	Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states https://doi.org/10.1038/s41590-021-01059-0Deposited data# 109,310 cells Dataset 1: 3 healthy young and 3 healthy old bone marrow donors (Reference sample) cell type: CD4+ memory T cells CD69+PD-1+ memory CD4+ T cells expressed genes: CD3E Dataset 2: 15 leukemic bone marrow donors cell type: CD4+ memory T cells CD69+PD-1+ memory CD4+ T cells expressed genes: CD3E Dataset 3: blood and bone marrow from a healthy young donor cell type: CD4+ memory T cells CD69+PD-1+ memory CD4+ T cells expressed genes: CD3E Dataset 4: healthy young bone marrow donor cell type: CD4+ memory T cells CD69+PD-1+ memory CD4+ T cells expressed genes: CD3E		Explore
12	Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19 https://doi.org/10.1016/j.cell.2021.02.018Deposited data# 372,081 cells Dataset 1: Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19: Adaptive Cells cell type: CD4-positive, alpha-beta memory T cell expressed genes: CD3E		Explore
13	Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 https://doi.org/10.1126/scitranslmed.abh2624Deposited data# 600,929 cells Dataset 1: Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 cell type: T4_Mem T4_Mem_Pool3 T4_Mem_Prolif_Early expressed genes: CD3E		Explore

Published data collections