Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

19 studies

61 datasets

4,497,262 cells

	Title	Total cells
1	A molecular cell atlas of the human lung from single cell RNA sequencing https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells Dataset 2: Krasnow Lab Human Lung Cell Atlas, Smart-seq2 cell type: B expressed genes: EXOSC9		Explore
2	Blood and immune development in human fetal bone marrow and Down syndrome https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells Dataset 3: Fetal Bone Marrow (10x) - Down Syndrome cell type: early B cell mature B cell expressed genes: EXOSC9		Explore
3	Charting human development using a multi-endodermal organ atlas and organoid models https://doi.org/10.1016/j.cell.2021.04.028Deposited data# 155,232 cells Dataset 1: Developing Human Atlas cell type: B cell expressed genes: EXOSC9		Explore
4	Follicular Lymphoma Microenvironment Characteristics Associated with Tumor Cell Mutations and MHC Class II Expression https://doi.org/10.1158/2643-3230.BCD-21-0075Deposited data# 137,147 cells Dataset 1: Single cell RNA sequencing of follicular lymphoma cell type: NormalB expressed genes: EXOSC9		Explore
5	Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19 https://doi.org/10.1126/sciimmunol.abd1554Deposited data# 59,572 cells Dataset 1: Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19 cell type: B cell, IgG- B cell, IgG+ expressed genes: EXOSC9		Explore
6	Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19 https://doi.org/10.1016/j.cell.2021.07.023Deposited data# 32,588 cells Dataset 1: Nasopharynx cell type: B Cells expressed genes: EXOSC9		Explore
7	Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes https://doi.org/10.1016/j.immuni.2020.03.019Deposited data# 71,732 cells Dataset 1: Single-Cell Transcriptome Profiling of Immature Human Thymocytes cell type: Mature_B_Cells expressed genes: EXOSC9		Explore
8	Local and systemic responses to SARS-CoV-2 infection in children and adults https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells Dataset 1: PBMC cell type: B invar expressed genes: EXOSC9		Explore
9	Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19 https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells Dataset 1: 49 years old male - Fresh PBMCs (2 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 3: 49 years old male - Fresh PBMCs (3 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 4: 66 years old female - Fresh PBMCs (2 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 5: 66 years old female - Airway Wash (2 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 6: 74 years old female - Airway Wash (3 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 7: 66 years old female - Fresh PBMCs (4 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 8: 74 years old female - Fresh PBMCs (3 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 9: 74 years old female - Fresh PBMCs (4 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 10: 74 years old female - Fresh PBMCs (7 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 11: 66 years old female - Fresh PBMCs (3 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 12: 74 years old female - Fresh PBMCs (8 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 13: 74 years old female - Airway Wash (1 day post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 14: 49 years old male - Fresh PBMCs (1 day post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 15: 66 years old female - Airway Wash (7 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 18: 66 years old female - Fresh PBMCs (7 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 20: 74 years old female - Airway Wash (6 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 24: 74 years old female - Airway Wash (8 days post-intubation) cell type: Bcell expressed genes: EXOSC9 Dataset 27: 74 years old female - Airway Wash (7 days post-intubation) cell type: Bcell expressed genes: EXOSC9		Explore
10	Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells Dataset 1: Single-cell transcriptomic datasets of Renal cell carcinoma patients cell type: B cell expressed genes: EXOSC9		Explore
11	Polybacterial intracellular coinfection of epithelial stem cells in periodontitis https://doi.org/10.1101/2023.08.23.554343Deposited data# 105,918 cells Dataset 1: An Integrated Single Cell Meta-atlas of Human Periodontitis cell type: B.Cells expressed genes: EXOSC9		Explore
12	Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses https://doi.org/10.1038/s41467-022-29450-xDeposited data# 113,289 cells Dataset 2: Activated PBMCs - Twins scRNA-seq cell type: B_cells_oligoclonal expressed genes: EXOSC9		Explore
13	Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response https://doi.org/10.1073/pnas.2103240118Deposited data# 29,129 cells Dataset 1: ccRCC - Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response cell type: Bcell expressed genes: EXOSC9		Explore
14	Single-cell multi-omics analysis of the immune response in COVID-19 https://doi.org/10.1038/s41591-021-01329-2Deposited data# 647,366 cells Dataset 1: Single-cell multi-omics analysis of the immune response in COVID-19 cell type: B_exhausted expressed genes: EXOSC9		Explore
15	Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemia https://doi.org/10.1182/blood.2021013442Deposited data# 128,588 cells Dataset 1: Global dataset of infant KMT2Ar B-ALL cell type: Mature_B expressed genes: EXOSC9		Explore
16	Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy https://doi.org/10.1016/j.ccell.2021.03.007Deposited data# 167,283 cells Dataset 1: Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy cell type: B cell expressed genes: EXOSC9		Explore
17	The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon https://doi.org/10.1016/j.immuni.2023.01.002Deposited data# 720,633 cells Dataset 1: TI immune cell type: B cells B cells AICDA LRMP expressed genes: EXOSC9 Dataset 3: colon immune cell type: B cells B cells AICDA LRMP expressed genes: EXOSC9		Explore
18	Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 https://doi.org/10.1126/scitranslmed.abh2624Deposited data# 600,929 cells Dataset 1: Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 cell type: B_Preplasm_1002 B_Preplasma_Early B_Preplasma_Late expressed genes: EXOSC9		Explore
19	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells Dataset 3: Lung Parenchyma cell type: B_cells expressed genes: EXOSC9		Explore

scRNA-seq studies - Human