ZSWIM4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
epithelial cell	3 studies	30% ± 7%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	1320.95	1438 / 1445	99%	11.69	182 / 183
ovary	100%	667.91	180 / 180	98%	16.92	421 / 430
intestine	100%	550.11	964 / 966	96%	6.07	506 / 527
lung	100%	1333.06	577 / 578	94%	6.31	1082 / 1155
stomach	99%	533.98	356 / 359	93%	7.21	267 / 286
skin	100%	1204.66	1808 / 1809	92%	6.15	432 / 472
pancreas	96%	459.15	316 / 328	94%	6.02	167 / 178
breast	100%	1011.01	458 / 459	88%	5.64	984 / 1118
bladder	100%	630.62	21 / 21	85%	4.96	426 / 504
brain	93%	359.53	2468 / 2642	89%	5.26	627 / 705
uterus	100%	857.06	170 / 170	79%	5.45	363 / 459
prostate	100%	1040.87	244 / 245	78%	3.19	393 / 502
thymus	100%	1199.29	653 / 653	78%	3.88	471 / 605
kidney	100%	909.20	89 / 89	76%	3.89	687 / 901
adrenal gland	100%	980.62	258 / 258	62%	2.95	142 / 230
spleen	100%	813.23	241 / 241	0%	0	0 / 0
adipose	100%	645.03	1201 / 1204	0%	0	0 / 0
blood vessel	98%	548.98	1303 / 1335	0%	0	0 / 0
heart	94%	459.83	810 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	89%	4.00	71 / 80
tonsil	0%	0	0 / 0	84%	7.10	38 / 45
peripheral blood	80%	486.47	747 / 929	0%	0	0 / 0
muscle	80%	303.58	640 / 803	0%	0	0 / 0
liver	57%	163.60	129 / 226	17%	1.26	68 / 406
lymph node	0%	0	0 / 0	48%	2.29	14 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1