VSTM2B report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
oligodendrocyte	9 studies	30% ± 9%	Explore
oligodendrocyte precursor cell	9 studies	33% ± 13%	Explore
glutamatergic neuron	4 studies	42% ± 19%	Explore
amacrine cell	3 studies	31% ± 8%	Explore
rod bipolar cell	3 studies	32% ± 7%	Explore
GABAergic neuron	3 studies	38% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	41% ± 12%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	2103.67	2634 / 2642	87%	28.08	615 / 705
adrenal gland	0%	1.68	1 / 258	13%	2.20	31 / 230
ovary	0%	0	0 / 180	13%	2.63	55 / 430
uterus	3%	9.49	5 / 170	3%	0.25	14 / 459
stomach	0%	0	0 / 359	5%	1.00	14 / 286
skin	0%	0	0 / 1809	4%	0.56	21 / 472
eye	0%	0	0 / 0	4%	0.39	3 / 80
lymph node	0%	0	0 / 0	3%	0.13	1 / 29
intestine	1%	1.36	5 / 966	2%	0.16	13 / 527
bladder	0%	0	0 / 21	2%	0.48	9 / 504
lung	0%	0	0 / 578	2%	0.26	19 / 1155
pancreas	0%	0	0 / 328	1%	0.21	2 / 178
esophagus	0%	0	0 / 1445	1%	0.09	2 / 183
kidney	0%	0	0 / 89	1%	0.17	5 / 901
thymus	0%	0	0 / 653	0%	0.17	2 / 605
breast	0%	0	0 / 459	0%	0.01	2 / 1118
abdomen	0%	0	0 / 0	0%	0	0 / 0
adipose	0%	0	0 / 1204	0%	0	0 / 0
blood vessel	0%	0	0 / 1335	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
heart	0%	0	0 / 861	0%	0	0 / 0
liver	0%	0	0 / 226	0%	0	0 / 406
muscle	0%	0	0 / 803	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
prostate	0%	0	0 / 245	0%	0	0 / 502
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1