Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 5 studies | 25% ± 7% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
liver | 3 studies | 27% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 1561.60 | 226 / 226 | 100% | 13.79 | 406 / 406 |
ovary | 100% | 1122.24 | 180 / 180 | 100% | 16.39 | 430 / 430 |
uterus | 100% | 1096.09 | 170 / 170 | 100% | 24.00 | 459 / 459 |
esophagus | 100% | 1290.79 | 1444 / 1445 | 100% | 17.76 | 183 / 183 |
breast | 100% | 1262.14 | 459 / 459 | 100% | 19.93 | 1117 / 1118 |
bladder | 100% | 1046.90 | 21 / 21 | 100% | 19.84 | 503 / 504 |
intestine | 100% | 1198.90 | 966 / 966 | 100% | 19.03 | 525 / 527 |
prostate | 100% | 1003.44 | 245 / 245 | 100% | 14.59 | 500 / 502 |
skin | 100% | 1964.47 | 1809 / 1809 | 100% | 16.58 | 470 / 472 |
stomach | 99% | 1062.02 | 357 / 359 | 100% | 17.11 | 286 / 286 |
thymus | 100% | 1072.53 | 653 / 653 | 99% | 12.68 | 600 / 605 |
brain | 99% | 711.52 | 2619 / 2642 | 100% | 12.83 | 705 / 705 |
kidney | 100% | 996.70 | 89 / 89 | 99% | 11.28 | 893 / 901 |
pancreas | 99% | 930.33 | 326 / 328 | 99% | 12.68 | 177 / 178 |
lung | 97% | 918.46 | 562 / 578 | 100% | 19.43 | 1155 / 1155 |
adrenal gland | 100% | 1628.18 | 258 / 258 | 94% | 9.12 | 216 / 230 |
adipose | 100% | 1160.62 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 18.52 | 29 / 29 |
spleen | 100% | 1530.68 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 30.19 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.10 | 1 / 1 |
blood vessel | 99% | 789.23 | 1328 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 8.25 | 76 / 80 |
heart | 91% | 401.25 | 784 / 861 | 0% | 0 | 0 / 0 |
muscle | 90% | 332.76 | 724 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 61% | 835.40 | 570 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006207 | Biological process | 'de novo' pyrimidine nucleobase biosynthetic process |
GO_0007595 | Biological process | lactation |
GO_0071466 | Biological process | cellular response to xenobiotic stimulus |
GO_0006225 | Biological process | UDP biosynthetic process |
GO_0044205 | Biological process | 'de novo' UMP biosynthetic process |
GO_0019856 | Biological process | pyrimidine nucleobase biosynthetic process |
GO_0007565 | Biological process | female pregnancy |
GO_0006222 | Biological process | UMP biosynthetic process |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0004590 | Molecular function | orotidine-5'-phosphate decarboxylase activity |
GO_0004588 | Molecular function | orotate phosphoribosyltransferase activity |
Gene name | UMPS |
Protein name | Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate phosphoribosyltransferase (OPRT) (OPRTase) (EC 2.4.2.10); Orotidine 5'-phosphate decarboxylase (ODC) (OMPD) (EC 4.1.1.23) (OMPdecase)] Uridine monophosphate synthetase isoform E Uridine monophosphate synthetase Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) Uridine 5'-monophosphate synthase (EC 2.4.2.10) (EC 4.1.1.23) |
Synonyms | OK/SW-cl.21 hCG_1780791 |
Description | FUNCTION: Bifunctional enzyme catalyzing the last two steps of de novo pyrimidine biosynthesis, orotate phosphoribosyltransferase (OPRT), which converts orotate to orotidine-5'-monophosphate (OMP), and orotidine-5'-monophosphate decarboxylase (ODC), the terminal enzymatic reaction that decarboxylates OMP to uridine monophosphate (UMP). . |
Accessions | ENST00000232607.7 [P11172-1] ENST00000462091.5 B5LY70 B5LY71 ENST00000479719.5 A8K5J1 E9PFD2 B5LY69 F2Z3P2 B5LY67 ENST00000628619.1 F8WDG4 P11172 B5LY64 ENST00000460034.5 ENST00000467167.5 ENST00000474588.5 ENST00000497791.5 F2Z303 |