TVP23C report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
astrocyte	5 studies	30% ± 18%	Explore
oligodendrocyte	4 studies	30% ± 9%	Explore
oligodendrocyte precursor cell	4 studies	38% ± 19%	Explore
interneuron	4 studies	49% ± 24%	Explore
glutamatergic neuron	3 studies	30% ± 18%	Explore
GABAergic neuron	3 studies	38% ± 13%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	5 studies	34% ± 16%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	654.92	653 / 653	93%	1.96	565 / 605
prostate	100%	573.94	245 / 245	84%	1.44	420 / 502
esophagus	100%	321.23	1445 / 1445	72%	1.38	131 / 183
uterus	100%	509.02	170 / 170	65%	1.18	298 / 459
lung	100%	385.03	578 / 578	61%	1.35	704 / 1155
adrenal gland	100%	504.94	258 / 258	61%	1.08	140 / 230
pancreas	100%	273.58	328 / 328	58%	1.03	104 / 178
bladder	100%	343.81	21 / 21	57%	1.16	288 / 504
breast	100%	406.66	459 / 459	54%	1.16	600 / 1118
kidney	100%	320.03	89 / 89	38%	0.64	342 / 901
stomach	100%	258.19	359 / 359	32%	0.64	91 / 286
skin	100%	368.30	1808 / 1809	31%	0.47	144 / 472
intestine	100%	287.44	966 / 966	26%	0.42	135 / 527
ovary	100%	709.45	180 / 180	17%	0.23	71 / 430
brain	99%	241.08	2617 / 2642	12%	0.19	86 / 705
spleen	100%	418.73	241 / 241	0%	0	0 / 0
liver	94%	166.01	212 / 226	6%	0.09	25 / 406
adipose	100%	303.43	1202 / 1204	0%	0	0 / 0
blood vessel	100%	360.26	1331 / 1335	0%	0	0 / 0
heart	96%	184.19	828 / 861	0%	0	0 / 0
peripheral blood	73%	124.37	676 / 929	0%	0	0 / 0
tonsil	0%	0	0 / 0	56%	1.10	25 / 45
muscle	43%	41.28	344 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	24%	0.31	7 / 29
eye	0%	0	0 / 0	15%	0.20	12 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1