Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 13 studies | 46% ± 14% | |
glutamatergic neuron | 9 studies | 48% ± 28% | |
oligodendrocyte precursor cell | 7 studies | 28% ± 11% | |
GABAergic neuron | 6 studies | 53% ± 23% | |
interneuron | 5 studies | 42% ± 23% | |
astrocyte | 5 studies | 29% ± 13% | |
neuron | 4 studies | 30% ± 17% | |
endothelial cell | 4 studies | 28% ± 10% | |
microglial cell | 4 studies | 18% ± 2% | |
GABAergic interneuron | 3 studies | 24% ± 3% | |
granule cell | 3 studies | 32% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 12 studies | 41% ± 23% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 614.32 | 1440 / 1445 | 100% | 4.18 | 183 / 183 |
prostate | 100% | 388.52 | 245 / 245 | 100% | 4.35 | 500 / 502 |
brain | 100% | 688.88 | 2635 / 2642 | 100% | 7.17 | 704 / 705 |
breast | 100% | 365.98 | 459 / 459 | 99% | 3.79 | 1107 / 1118 |
intestine | 99% | 656.69 | 958 / 966 | 99% | 3.48 | 523 / 527 |
pancreas | 99% | 256.58 | 326 / 328 | 99% | 2.76 | 176 / 178 |
thymus | 99% | 302.88 | 649 / 653 | 98% | 3.21 | 592 / 605 |
skin | 100% | 392.17 | 1801 / 1809 | 97% | 3.74 | 459 / 472 |
uterus | 100% | 468.33 | 170 / 170 | 97% | 3.37 | 443 / 459 |
bladder | 100% | 545.76 | 21 / 21 | 95% | 2.98 | 478 / 504 |
ovary | 100% | 317.88 | 180 / 180 | 95% | 2.74 | 407 / 430 |
lung | 97% | 313.52 | 562 / 578 | 96% | 3.28 | 1111 / 1155 |
adrenal gland | 100% | 474.13 | 258 / 258 | 93% | 3.42 | 213 / 230 |
stomach | 93% | 348.04 | 333 / 359 | 100% | 4.31 | 285 / 286 |
kidney | 94% | 200.90 | 84 / 89 | 94% | 3.11 | 851 / 901 |
liver | 94% | 179.94 | 212 / 226 | 92% | 2.35 | 374 / 406 |
blood vessel | 100% | 833.56 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 794.30 | 803 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 3.18 | 45 / 45 |
adipose | 100% | 347.75 | 1199 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 3.35 | 78 / 80 |
spleen | 97% | 226.97 | 234 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 4.01 | 27 / 29 |
heart | 88% | 213.78 | 757 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 26% | 43.79 | 240 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0018095 | Biological process | protein polyglutamylation |
GO_0051013 | Biological process | microtubule severing |
GO_0036211 | Biological process | protein modification process |
GO_0000226 | Biological process | microtubule cytoskeleton organization |
GO_0005929 | Cellular component | cilium |
GO_0036064 | Cellular component | ciliary basal body |
GO_0005829 | Cellular component | cytosol |
GO_0005874 | Cellular component | microtubule |
GO_0070740 | Molecular function | tubulin-glutamic acid ligase activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0005524 | Molecular function | ATP binding |
GO_0015631 | Molecular function | tubulin binding |
Gene name | TTLL11 |
Protein name | Tubulin polyglutamylase TTLL11 (EC 6.3.2.-) (Tubulin--tyrosine ligase-like protein 11) Tubulin tyrosine ligase like 11 Tubulin tyrosine ligase-like family, member 11, isoform CRA_e (cDNA FLJ43188 fis, clone FCBBF3023895, weakly similar to Caenorhabditis elegans tubulin-tyrosine ligase) |
Synonyms | C9orf20 hCG_1818549 |
Description | FUNCTION: Polyglutamylase which modifies tubulin, generating polyglutamate side chains of variable lengths on the gamma-carboxyl group of specific glutamate residues within the C-terminal tail of tubulin. Preferentially mediates ATP-dependent polyglutamate long side-chain elongation over the initiation step of the polyglutamylation reaction. Preferentially modifies the alpha-tubulin tail over a beta-tail (By similarity). Required for CCSAP localization to both spindle and cilia microtubules . Promotes tubulin polyglutamylation which stimulates spastin/SPAST-mediated microtubule severing, thereby regulating microtubule functions (By similarity). . |
Accessions | A0A087WUG8 ENST00000487468.5 ENST00000685478.1 ENST00000321582.11 [Q8NHH1-1] A0AA75MRL2 Q6ZUZ3 A0A087WU58 ENST00000474723.5 ENST00000373776.5 [Q8NHH1-2] ENST00000373778.5 Q8NHH1 A0A087WVF6 |