TTC9 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	6 studies	24% ± 6%	Explore
squamous epithelial cell	4 studies	49% ± 16%	Explore
epithelial cell	3 studies	31% ± 15%	Explore
basal cell	3 studies	25% ± 7%	Explore
GABAergic neuron	3 studies	25% ± 4%	Explore
glutamatergic neuron	3 studies	29% ± 9%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	1101.48	652 / 653	93%	20.86	562 / 605
lung	98%	786.09	565 / 578	90%	23.28	1041 / 1155
brain	94%	1574.06	2486 / 2642	94%	13.22	660 / 705
prostate	85%	483.62	209 / 245	96%	11.82	484 / 502
breast	64%	535.47	295 / 459	97%	28.84	1085 / 1118
kidney	94%	672.82	84 / 89	61%	7.42	552 / 901
esophagus	67%	4876.38	966 / 1445	82%	19.70	150 / 183
stomach	76%	589.57	272 / 359	56%	6.47	159 / 286
pancreas	31%	135.97	103 / 328	94%	20.68	168 / 178
bladder	43%	205.86	9 / 21	76%	14.42	381 / 504
spleen	100%	1254.88	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	21.16	1 / 1
muscle	98%	1393.82	787 / 803	0%	0	0 / 0
uterus	13%	96.14	22 / 170	84%	23.92	384 / 459
tonsil	0%	0	0 / 0	96%	32.51	43 / 45
intestine	33%	195.31	323 / 966	61%	7.98	324 / 527
lymph node	0%	0	0 / 0	90%	14.75	26 / 29
liver	19%	86.65	42 / 226	68%	12.74	278 / 406
adrenal gland	53%	246.07	138 / 258	33%	3.73	77 / 230
skin	72%	1000.76	1302 / 1809	15%	1.47	70 / 472
peripheral blood	83%	1275.45	767 / 929	0%	0	0 / 0
ovary	1%	2.73	2 / 180	81%	14.84	349 / 430
heart	43%	177.49	366 / 861	0%	0	0 / 0
blood vessel	42%	305.40	556 / 1335	0%	0	0 / 0
adipose	30%	147.96	356 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	1%	0.15	1 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0