TTC39A report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
goblet cell	5 studies	32% ± 9%	Explore
retinal ganglion cell	4 studies	57% ± 26%	Explore
pancreatic A cell	3 studies	33% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
pancreas	3 studies	26% ± 5%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	95%	1713.55	232 / 245	100%	27.37	500 / 502
kidney	100%	2283.04	89 / 89	93%	17.77	838 / 901
pancreas	100%	796.97	328 / 328	92%	12.86	164 / 178
thymus	99%	712.46	649 / 653	75%	7.42	452 / 605
breast	69%	1711.38	317 / 459	96%	52.90	1068 / 1118
stomach	76%	1040.70	273 / 359	84%	14.30	239 / 286
adrenal gland	99%	800.31	256 / 258	53%	4.70	123 / 230
intestine	50%	812.29	480 / 966	92%	16.49	486 / 527
lung	71%	829.74	411 / 578	70%	9.93	812 / 1155
bladder	48%	499.57	10 / 21	80%	12.21	402 / 504
skin	72%	594.18	1295 / 1809	43%	10.05	205 / 472
esophagus	39%	654.59	557 / 1445	62%	8.07	114 / 183
ureter	0%	0	0 / 0	100%	9.58	1 / 1
heart	91%	681.85	781 / 861	0%	0	0 / 0
uterus	16%	77.20	28 / 170	53%	7.51	245 / 459
muscle	65%	215.76	519 / 803	0%	0	0 / 0
liver	25%	114.70	56 / 226	33%	4.67	132 / 406
brain	53%	266.04	1411 / 2642	2%	0.10	14 / 705
ovary	1%	2.34	2 / 180	53%	5.74	228 / 430
tonsil	0%	0	0 / 0	24%	2.14	11 / 45
peripheral blood	9%	29.53	87 / 929	0%	0	0 / 0
adipose	5%	13.76	56 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	3%	0.27	1 / 29
blood vessel	2%	5.95	24 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	1%	0.11	1 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0