Name | Number of supported studies | Average coverage | |
---|---|---|---|
retinal bipolar neuron | 5 studies | 72% ± 14% | |
retinal pigment epithelial cell | 5 studies | 72% ± 10% | |
ON-bipolar cell | 4 studies | 81% ± 18% | |
melanocyte | 4 studies | 63% ± 15% | |
rod bipolar cell | 3 studies | 95% ± 4% | |
oligodendrocyte | 3 studies | 20% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
eye | 3 studies | 22% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
skin | 73% | 456.02 | 1325 / 1809 | 78% | 44.89 | 368 / 472 |
eye | 0% | 0 | 0 / 0 | 100% | 97.23 | 80 / 80 |
brain | 28% | 38.75 | 729 / 2642 | 0% | 0.00 | 2 / 705 |
kidney | 10% | 4.36 | 9 / 89 | 1% | 0.03 | 7 / 901 |
adipose | 8% | 6.03 | 93 / 1204 | 0% | 0 | 0 / 0 |
breast | 7% | 5.66 | 33 / 459 | 0% | 0.00 | 2 / 1118 |
esophagus | 1% | 0.58 | 14 / 1445 | 3% | 0.09 | 5 / 183 |
uterus | 3% | 3.84 | 5 / 170 | 1% | 0.34 | 3 / 459 |
lung | 1% | 0.59 | 5 / 578 | 1% | 0.04 | 12 / 1155 |
stomach | 0% | 0.13 | 1 / 359 | 1% | 0.01 | 3 / 286 |
liver | 0% | 0.19 | 1 / 226 | 0% | 0.01 | 2 / 406 |
blood vessel | 1% | 0.71 | 12 / 1335 | 0% | 0 | 0 / 0 |
ovary | 0% | 0 | 0 / 180 | 1% | 0.01 | 3 / 430 |
spleen | 0% | 0.24 | 1 / 241 | 0% | 0 | 0 / 0 |
prostate | 0% | 1.09 | 1 / 245 | 0% | 0 | 0 / 502 |
bladder | 0% | 0 | 0 / 21 | 0% | 0.02 | 2 / 504 |
intestine | 0% | 0.22 | 2 / 966 | 0% | 0 | 0 / 527 |
muscle | 0% | 0.06 | 1 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adrenal gland | 0% | 0 | 0 / 258 | 0% | 0 | 0 / 230 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
pancreas | 0% | 0 | 0 / 328 | 0% | 0 | 0 / 178 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
thymus | 0% | 0 | 0 / 653 | 0% | 0 | 0 / 605 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051262 | Biological process | protein tetramerization |
GO_0098703 | Biological process | calcium ion import across plasma membrane |
GO_0007601 | Biological process | visual perception |
GO_0007216 | Biological process | G protein-coupled glutamate receptor signaling pathway |
GO_0098655 | Biological process | monoatomic cation transmembrane transport |
GO_0071482 | Biological process | cellular response to light stimulus |
GO_0030001 | Biological process | metal ion transport |
GO_0070588 | Biological process | calcium ion transmembrane transport |
GO_0030424 | Cellular component | axon |
GO_0005886 | Cellular component | plasma membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005262 | Molecular function | calcium channel activity |
Gene name | TRPM1 |
Protein name | Transient receptor potential cation channel subfamily M member 1 Transient receptor potential cation channel subfamily M member 1 (Long transient receptor potential channel 1) (LTrpC1) (Melastatin-1) |
Synonyms | LTRPC1 MLSN MLSN1 |
Description | FUNCTION: Forms nonselective divalent cation-conducting channels which mediate the influx of Na(+), Ca(2+), Mg(2+), Mn(2+), Ba(2+), and Ni(2+) into the cytoplasm, leading to membrane depolarization . Impermeable to zinc ions . In addition, forms heteromultimeric ion channels with TRPM3 which are permeable for calcium and zinc ions . Essential for the depolarizing photoresponse of retinal ON bipolar cells. It is part of the GRM6 signaling cascade. May play a role in metastasis suppression (By similarity). May act as a spontaneously active, calcium-permeable plasma membrane channel. . |
Accessions | ENST00000559179.2 [Q7Z4N2-7] ENST00000397795.7 [Q7Z4N2-1] ENST00000558768.5 C9EH86 A0A0A0MTR0 H0YM61 A0A0A0MTQ9 H0YKU7 ENST00000611448.4 ENST00000617515.4 ENST00000256552.11 [Q7Z4N2-6] ENST00000621076.1 A0A0G2JPN6 ENST00000559177.6 ENST00000558445.6 A0A0G2JMJ5 A0A0G2JMR4 ENST00000560658.5 [Q7Z4N2-4] ENST00000558445.6 [Q7Z4N2-5] Q7Z4N2 ENST00000615583.4 A0A0G2JN34 ENST00000618210.4 ENST00000560801.5 |