SSPOP report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
astrocyte	3 studies	18% ± 2%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	98%	1536.98	2595 / 2642	63%	1.92	442 / 705
prostate	99%	749.38	242 / 245	45%	1.00	228 / 502
ovary	99%	729.35	178 / 180	32%	0.76	138 / 430
adrenal gland	97%	441.04	251 / 258	30%	0.77	70 / 230
breast	96%	494.69	439 / 459	31%	0.68	347 / 1118
thymus	99%	849.93	649 / 653	19%	0.44	114 / 605
uterus	99%	754.24	169 / 170	9%	0.21	42 / 459
lung	98%	586.70	568 / 578	7%	0.16	83 / 1155
kidney	99%	727.92	88 / 89	6%	0.09	51 / 901
liver	90%	358.05	203 / 226	11%	0.27	46 / 406
spleen	100%	484.51	241 / 241	0%	0	0 / 0
adipose	92%	406.05	1106 / 1204	0%	0	0 / 0
pancreas	86%	254.94	282 / 328	6%	0.17	10 / 178
stomach	88%	268.21	315 / 359	3%	0.05	9 / 286
intestine	83%	236.25	801 / 966	2%	0.04	11 / 527
esophagus	71%	168.85	1021 / 1445	5%	0.10	9 / 183
bladder	71%	202.86	15 / 21	3%	0.07	16 / 504
skin	62%	148.05	1114 / 1809	3%	0.06	14 / 472
blood vessel	51%	118.84	677 / 1335	0%	0	0 / 0
peripheral blood	50%	123.19	469 / 929	0%	0	0 / 0
heart	50%	111.26	433 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	3%	0.05	1 / 29
eye	0%	0	0 / 0	3%	0.03	2 / 80
tonsil	0%	0	0 / 0	2%	0.02	1 / 45
muscle	2%	3.39	16 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1